Rory Johnson

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Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Lawrence W. StantonQatar Biomedical Research InstituteVerified email at hbku.edu.qa
Carme ArnanCRGVerified email at crg.es
Dmitri PervouchineSkolkovo Institute for Science and TechnologyVerified email at skoltech.ru
Marta MeléGroup Leader at Barcelona Supercomputing CenterVerified email at bsc.es
Thierry PedrazziniUniversity of Lausanne Medical SchoolVerified email at chuv.ch
Sarah DjebaliIRSD, INSERM U1220, ToulouseVerified email at inserm.fr
Adam FrankishManual Genome Annotation Coordinator, EMBL-EBIVerified email at ebi.ac.uk
Michael SammethInstitute of Biophysics Carlos Chagas Filho (IBCCF), Federal University of Rio de Janeiro (UFRJ)Verified email at sammeth.net
Jean MonlongUC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at mail.mcgill.ca
David S. DeLucaHannover Medical SchoolVerified email at mh-hannover.de
Andrés LanzósBioMedical Data ScientistVerified email at runbox.com
Julien LagardeFlomics BiotechVerified email at flomics.com
Barbara Uszczynska-RatajczakIBCH PASVerified email at ibch.poznan.pl
Taisia PolidoriPostdoc at the Department for BioMedical Research (Bern, Switzerland).Verified email at dbmr.unibe.ch
Pedro G. FerreiraDepartment of Computer Science, Faculty of Sciences University of Porto; INESC-TECVerified email at fc.up.pt
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Samir OunzainHAYA TherapeuticsVerified email at hayatx.com
Rudi MichelettiucsdVerified email at ucsd.edu
Michael AlexanianGladstone Institute of Cardiovascular DiseaseVerified email at gladstone.ucsf.edu

Rory Johnson

University College Dublin

Verified email at ucd.ie - Homepage

RNA Therapeutics Cancer CRISPR Long Noncoding RNA RNA Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012	13819	2012
Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012	5469	2012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012	5266	2012
GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019	2565	2019
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	1684*	2020
The human transcriptome across tissues and individuals M Melé, PG Ferreira, F Reverter, DS DeLuca, J Monlong, M Sammeth, ... Science 348 (6235), 660-665, 2015	1307	2015
Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020	1150	2020
GENCODE 2021 A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ... Nucleic acids research 49 (D1), D916-D923, 2021	709	2021
Human long non‐coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors SY Ng, R Johnson, LW Stanton The EMBO journal 31 (3), 522-533, 2012	606	2012
Towards a complete map of the human long non-coding RNA transcriptome B Uszczynska-Ratajczak, J Lagarde, A Frankish, R Guigó, R Johnson Nature Reviews Genetics 19 (9), 535-548, 2018	519	2018
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs H Tilgner, DG Knowles, R Johnson, CA Davis, S Chakrabortty, S Djebali, ... Genome research 22 (9), 1616-1625, 2012	512	2012
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020	499	2020
A microRNA-based gene dysregulation pathway in Huntington's disease R Johnson, C Zuccato, ND Belyaev, DJ Guest, E Cattaneo, NJ Buckley Neurobiology of disease 29 (3), 438-445, 2008	436	2008
Long non-coding RNAs in Huntington's disease neurodegeneration R Johnson Neurobiology of disease 46 (2), 245-254, 2012	429	2012
Genome-wide computational identification and manual annotation of human long noncoding RNA genes H Jia, M Osak, GK Bogu, LW Stanton, R Johnson, L Lipovich Rna 16 (8), 1478-1487, 2010	428	2010
Long non-coding RNAs: definitions, functions, challenges and recommendations JS Mattick, PP Amaral, P Carninci, S Carpenter, HY Chang, LL Chen, ... Nature reviews Molecular cell biology 24 (6), 430-447, 2023	403	2023
The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs R Johnson, R Guigó Rna 20 (7), 959-976, 2014	307	2014
Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs S Ounzain, R Micheletti, T Beckmann, B Schroen, M Alexanian, I Pezzuto, ... European heart journal 36 (6), 353-368, 2015	279	2015
LncATLAS database for subcellular localization of long noncoding RNAs D Mas-Ponte, J Carlevaro-Fita, E Palumbo, TH Pulido, R Guigo, ... Rna 23 (7), 1080-1087, 2017	268	2017
Global positioning system: understanding long noncoding RNAs through subcellular localization J Carlevaro-Fita, R Johnson Molecular cell 73 (5), 869-883, 2019	260	2019

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