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Kristofer Davie
Kristofer Davie
Head, Single Cell Bioinformatics Expertise Unit, VIB-CBD, KU Leuven
Verified email at kuleuven.be
Title
Cited by
Cited by
Year
A single-cell transcriptome atlas of the aging Drosophila brain
K Davie, J Janssens, D Koldere, M De Waegeneer, U Pech, Ł Kreft, ...
Cell 174 (4), 982-998. e20, 2018
3712018
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data
C Bravo González-Blas, L Minnoye, D Papasokrati, S Aibar, ...
Nature methods 16 (5), 397-400, 2019
1652019
Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling
K Davie, J Jacobs, M Atkins, D Potier, V Christiaens, G Halder, S Aerts
PLoS genetics 11 (2), e1004994, 2015
1552015
A scalable SCENIC workflow for single-cell gene regulatory network analysis
B Van de Sande, C Flerin, K Davie, M De Waegeneer, G Hulselmans, ...
Nature Protocols 15 (7), 2247-2276, 2020
1432020
The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes
J Jacobs, M Atkins, K Davie, H Imrichova, L Romanelli, V Christiaens, ...
Nature genetics 50 (7), 1011-1020, 2018
932018
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma
J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ...
Nature Cell Biology 22 (8), 986-998, 2020
622020
Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference
D Potier, K Davie, G Hulselmans, MN Sanchez, L Haagen, D Koldere, ...
Cell reports 9 (6), 2290-2303, 2014
612014
Xenotransplanted human cortical neurons reveal species-specific development and functional integration into mouse visual circuits
D Linaro, B Vermaercke, R Iwata, A Ramaswamy, B Libé-Philippot, ...
Neuron 104 (5), 972-986. e6, 2019
582019
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic
A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ...
Genome research 26 (7), 882-895, 2016
572016
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings
I Almudi, J Vizueta, CDR Wyatt, A de Mendoza, F Marlétaz, PN Firbas, ...
Nature communications 11 (1), 1-11, 2020
292020
Identification of genomic enhancers through spatial integration of single‐cell transcriptomics and epigenomics
C Bravo González‐Blas, XJ Quan, R Duran‐Romaña, II Taskiran, ...
Molecular systems biology 16 (5), e9438, 2020
242020
Fly Cell Atlas: a single-cell transcriptomic atlas of the adult fruit fly
H Li, J Janssens, M De Waegeneer, SS Kolluru, K Davie, V Gardeux, ...
bioRxiv, 2021
192021
Actuation enhances patterning in human neural tube organoids
AR Abdel Fattah, B Daza, G Rustandi, MÁ Berrocal-Rubio, B Gorissen, ...
Nature communications 12 (1), 1-13, 2021
142021
Establishment of the mayfly Cloeon dipterum as a new model system to investigate insect evolution
I Almudi, CA Martín-Blanco, IM García-Fernandez, A López-Catalina, ...
Evodevo 10 (1), 1-10, 2019
132019
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
H Li, J Janssens, M De Waegeneer, SS Kolluru, K Davie, V Gardeux, ...
Science 375 (6584), eabk2432, 2022
82022
Single-cell gene regulatory network analysis reveals new melanoma cell states and transition trajectories during phenotype switching
J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ...
BiorXiv, 715995, 2019
62019
Cis-topic modelling of single-cell epigenomes
CB González-Blas, L Minnoye, D Papasokrati, S Aibar, G Hulselmans, ...
bioRxiv, 370346, 2018
52018
A single-cell catalogue of regulatory states in the ageing Drosophila brain
K Davie, J Janssens, D Koldere, U Pech, S Aibar, M De Waegeneer, ...
bioRxiv, 237420, 2017
42017
Genomic adaptations to aquatic and aerial life in mayflies and the origin of wings in insects
I Almudi, J Vizueta, A de Mendoza, C Wyatt, F Marletaz, P Firbas, R Feuda, ...
12019
Species-specific mitochondria dynamics and metabolism regulate the timing of neuronal development
R Iwata, P Casimir, E Erkol, L Boubakar, M Planque, M Ditkowska, K Vints, ...
bioRxiv, 2021
2021
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