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Pieter C Dorrestein
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
73332019
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
22122016
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature
PG Arnison, MJ Bibb, G Bierbaum, AA Bowers, TS Bugni, G Bulaj, ...
Natural product reports 30 (1), 108-160, 2013
16892013
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
10332018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
8092018
Mass spectral molecular networking of living microbial colonies
J Watrous, P Roach, T Alexandrov, BS Heath, JY Yang, RD Kersten, ...
Proceedings of the National Academy of Sciences 109 (26), E1743-E1752, 2012
7892012
Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis
T Nakatsuji, TH Chen, S Narala, KA Chun, AM Two, T Yun, F Shafiq, ...
Science translational medicine 9 (378), eaah4680, 2017
7292017
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
6792015
ncRNA-and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs
L Yang, C Lin, W Liu, J Zhang, KA Ohgi, JD Grinstein, PC Dorrestein, ...
Cell 147 (4), 773-788, 2011
6572011
Microbiome-wide association studies link dynamic microbial consortia to disease
JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ...
Nature 535 (7610), 94-103, 2016
5922016
Molecular networking as a dereplication strategy
JY Yang, LM Sanchez, CM Rath, X Liu, PD Boudreau, N Bruns, E Glukhov, ...
Journal of natural products 76 (9), 1686-1699, 2013
5372013
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information
K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ...
Nature methods 16 (4), 299-302, 2019
4962019
Specialized metabolites from the microbiome in health and disease
G Sharon, N Garg, J Debelius, R Knight, PC Dorrestein, SK Mazmanian
Cell metabolism 20 (5), 719-730, 2014
4862014
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), e00031-18, 2018
4722018
Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A
K Yamanaka, KA Reynolds, RD Kersten, KS Ryan, DJ Gonzalez, V Nizet, ...
Proceedings of the National Academy of Sciences 111 (5), 1957-1962, 2014
4162014
A monovalent streptavidin with a single femtomolar biotin binding site
M Howarth, DJF Chinnapen, K Gerrow, PC Dorrestein, MR Grandy, ...
Nature methods 3 (4), 267-273, 2006
4102006
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
4082020
PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression
W Liu, B Tanasa, OV Tyurina, TY Zhou, R Gassmann, WT Liu, KA Ohgi, ...
Nature 466 (7305), 508-512, 2010
4022010
A mass spectrometry–guided genome mining approach for natural product peptidogenomics
RD Kersten, YL Yang, Y Xu, P Cimermancic, SJ Nam, W Fenical, ...
Nature chemical biology 7 (11), 794-802, 2011
3752011
Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity
S Shalapour, XJ Lin, IN Bastian, J Brain, AD Burt, AA Aksenov, ...
Nature 551 (7680), 340-345, 2017
3682017
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