Rónán Daly

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Simon RogersSenior Lecturer, Computing Science, University of GlasgowVerified email at glasgow.ac.uk
Joe WandyPrincipal Bioinformatics Developer, MetabolonVerified email at metabolon.com
Qiang ShenDepartment of Computer Science, Aberystwyth UniversityVerified email at aber.ac.uk
Karl BurgessProfessor, University of EdinburghVerified email at ed.ac.uk
Justin J.J. van der HooftAssistant Professor Computational Metabolomics @ WURVerified email at wur.nl
MP Barrettuniversity of GlasgowVerified email at glasgow.ac.uk
Stefan WeidtMass Spectrometry Technologist for Glasgow Polyomics at the University of GlasgowVerified email at glasgow.ac.uk
Vinny DaviesSenior Lecturer in Statistics, University of GlasgowVerified email at Glasgow.ac.uk
Gavin BlackburnVerified email at glasgow.ac.uk
Rainer BreitlingProfessor of Systems Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Isabel M VincentGlasgow UniversityVerified email at glasgow.ac.uk
Andrew PittUniversity of ManchesterVerified email at aston.ac.uk
Walter KolchDirector, Systems Biology Ireland, University College DublinVerified email at ucd.ie
Andris JankevicsBiomolecular Mass Spectrometry and Proteomics, Utrecht UniversityVerified email at uu.nl
Mark GirolamiUniversity of CambridgeVerified email at cam.ac.uk
Grímur Hjörleifsson EldjárnResearch Scientist, deCODE GeneticsVerified email at decode.is
Andrew RamsayResearch Assistant, School of Computing Science, University of GlasgowVerified email at glasgow.ac.uk
Katherine R DuncanSenior LecturerVerified email at newcastle.ac.uk
Juho RousuProfessor, Department of Computer Science, Aalto UniversityVerified email at aalto.fi
Sylvia SoldatouUniversity of AberdeenVerified email at abdn.ac.uk

Rónán Daly

Head of Biological Data Science, University of Glasgow, MVLS Shared Research Facilities

Verified email at glasgow.ac.uk

Machine Learning Bayesian statistics Graphical Models Causality Computational Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Learning Bayesian networks: Approaches and issues R Daly, Q Shen, S Aitken The Knowledge Engineering Review 26 (2), 99-157, 2011	461	2011
Ms2lda. org: web-based topic modelling for substructure discovery in mass spectrometry J Wandy, Y Zhu, JJJ van der Hooft, R Daly, MP Barrett, S Rogers Bioinformatics 34 (2), 317-318, 2018	117	2018
Learning Bayesian network equivalence classes with ant colony optimization R Daly, Q Shen Journal of Artificial Intelligence Research 35, 391-447, 2009	100	2009
MetAssign: probabilistic annotation of metabolites from LC–MS data using a Bayesian clustering approach R Daly, S Rogers, J Wandy, A Jankevics, KEV Burgess, R Breitling Bioinformatics 30 (19), 2764-2771, 2014	81	2014
Rapid Development of Improved Data-Dependent Acquisition Strategies V Davies, J Wandy, S Weidt, JJJ van der Hooft, A Miller, R Daly, S Rogers Analytical Chemistry, 2021	71	2021
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data Y Gloaguen, F Morton, R Daly, R Gurden, S Rogers, J Wandy, D Wilson, ... Bioinformatics 33 (24), 4007-4009, 2017	54	2017
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions SR Grimur Hjorleifsson Eldjarn, Andrew Ramsey, Justin JJ van der Hooft ... PLOS Computational Biology, 2021	53	2021
Methods to accelerate the learning of bayesian network structures R Daly, Q Shen UK workshop on Computational Intelligence, 2007	48	2007
High sodium intake, glomerular hyperfiltration, and protein catabolism in patients with essential hypertension G Rossitto, G Maiolino, S Lerco, G Ceolotto, G Blackburn, S Mary, ... Cardiovascular research 117 (5), 1372-1381, 2021	46	2021
Metabolomics identifies multiple candidate biomarkers to diagnose and stage human African trypanosomiasis IM Vincent, R Daly, B Courtioux, AM Cattanach, S Biéler, JM Ndung’u, ... PLoS neglected tropical diseases 10 (12), e0005140, 2016	46	2016
Changes in plasma itaconate elevation in early rheumatoid arthritis patients elucidates disease activity associated macrophage activation R Daly, G Blackburn, C Best, CS Goodyear, M Mudaliar, K Burgess, ... Metabolites 10 (6), 241, 2020	39	2020
MetaNetter 2: A Cytoscape plugin for ab initio network analysis and metabolite feature classification KEV Burgess, Y Borutzki, N Rankin, R Daly, F Jourdan Journal of Chromatography B 1071, 68-74, 2017	32	2017
The Renilla luciferase gene as a reference gene for normalization of gene expression in transiently transfected cells M Jiwaji, R Daly, K Pansare, P McLean, J Yang, W Kolch, AR Pitt BMC Molecular Biology 11, 1-12, 2010	28	2010
Ranking metabolite sets by their activity levels K McLuskey, J Wandy, I Vincent, JJJ Van Der Hooft, S Rogers, K Burgess, ... Metabolites 11 (2), 103, 2021	27*	2021
In silico optimization of mass spectrometry fragmentation strategies in metabolomics J Wandy, V Davies, JJJ Van Der Hooft, S Weidt, R Daly, S Rogers Metabolites 9 (10), 219, 2019	24	2019
A monolithic single-chip point-of-care platform for metabolomic prostate cancer detection VF Annese, SB Patil, C Hu, C Giagkoulovits, MA Al-Rawhani, J Grant, ... Microsystems & nanoengineering 7 (1), 21, 2021	23	2021
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets J Wandy, R Daly, R Breitling, S Rogers Bioinformatics 31 (12), 1999-2006, 2015	20	2015
Quantification of functionalised gold nanoparticle-targeted knockdown of gene expression in HeLa cells M Jiwaji, ME Sandison, J Reboud, R Stevenson, R Daly, G Barkess, ... Plos one 9 (6), e99458, 2014	15	2014
Using Ant Colony Optimisation in Learning Bayesian Network Equivalence Classes R Daly, Q Shen, S Aitken UK Workshop on Computational Intelligence, 111-118, 2006	15	2006
Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana R Daly, K Edwards, J O’Neill, S Aitken, A Millar, M Girolami Proceedings of the Fourth IAPR International Conference on Pattern …, 2009	14	2009

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