| mCSM-PPI2: predicting the effects of mutations on protein–protein interactions CHM Rodrigues, Y Myung, DEV Pires, DB Ascher Nucleic acids research 47 (W1), W338-W344, 2019 | 332 | 2019 |
| Mercury methylation by metabolically versatile and cosmopolitan marine bacteria H Lin, DB Ascher, Y Myung, CH Lamborg, SJ Hallam, CM Gionfriddo, ... The ISME Journal 15 (6), 1810-1825, 2021 | 110 | 2021 |
| Sequence grammar underlying the unfolding and phase separation of globular proteins KM Ruff, YH Choi, D Cox, AR Ormsby, Y Myung, DB Ascher, SE Radford, ... Molecular cell 82 (17), 3193-3208. e8, 2022 | 83 | 2022 |
| mCSM-AB2: guiding rational antibody design using graph-based signatures Y Myung, CHM Rodrigues, DB Ascher, DEV Pires Bioinformatics 36 (5), 1453-1459, 2020 | 69 | 2020 |
| Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource S Portelli, M Olshansky, CHM Rodrigues, EN D’Souza, Y Myung, M Silk, ... Nature genetics 52 (10), 999-1001, 2020 | 63 | 2020 |
| epitope3D: a machine learning method for conformational B-cell epitope prediction BM da Silva, YC Myung, DB Ascher, DEV Pires Briefings in Bioinformatics 23 (1), bbab423, 2022 | 58 | 2022 |
| Development of natural compound molecular fingerprint (NC-MFP) with the dictionary of natural products (DNP) for natural product-based drug development M Seo, HK Shin, Y Myung, S Hwang, KT No Journal of Cheminformatics 12 (1), 6, 2020 | 56 | 2020 |
| Prediction of rifampicin resistance beyond the RRDR using structure-based machine learning approaches S Portelli, Y Myung, N Furnham, SC Vedithi, DEV Pires, DB Ascher Scientific reports 10 (1), 18120, 2020 | 49 | 2020 |
| CSM-AB: graph-based antibody–antigen binding affinity prediction and docking scoring function Y Myung, DEV Pires, DB Ascher Bioinformatics 38 (4), 1141-1143, 2022 | 48 | 2022 |
| mmCSM-AB: guiding rational antibody engineering through multiple point mutations Y Myung, DEV Pires, DB Ascher Nucleic acids research 48 (W1), W125-W131, 2020 | 47 | 2020 |
| Deep-PK: deep learning for small molecule pharmacokinetic and toxicity prediction Y Myung, AGC de Sá, DB Ascher Nucleic acids research 52 (W1), W469-W475, 2024 | 42 | 2024 |
| EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening DEV Pires, WNP Veloso, YC Myung, CHM Rodrigues, M Silk, ... Bioinformatics 36 (14), 4200-4202, 2020 | 29 | 2020 |
| mmCSM-NA: accurately predicting effects of single and multiple mutations on protein–nucleic acid binding affinity TB Nguyen, Y Myung, AGC de Sá, DEV Pires, DB Ascher NAR genomics and bioinformatics 3 (4), lqab109, 2021 | 16 | 2021 |
| A niosomal bilayer of sorbitan monostearate in complex with flavones: a molecular dynamics simulation study Y Myung, S Yeom, S Han Journal of liposome research 26 (4), 336-344, 2016 | 15 | 2016 |
| Force field parameters for 3-nitrotyrosine and 6-nitrotryptophan YC Myung, SH Han Bulletin of the Korean Chemical Society 31 (9), 2581-2587, 2010 | 13 | 2010 |
| Understanding the complementarity and plasticity of antibody–antigen interfaces Y Myung, DEV Pires, DB Ascher Bioinformatics 39 (7), btad392, 2023 | 12 | 2023 |
| DDMut-PPI: predicting effects of mutations on protein–protein interactions using graph-based deep learning Y Zhou, YC Myung, CHM Rodrigues, DB Ascher Nucleic Acids Research 52 (W1), W207-W214, 2024 | 9 | 2024 |
| VIVID: a web application for variant interpretation and visualization in multi-dimensional analyses S Tichkule, Y Myung, MT Naung, BRE Ansell, AJ Guy, N Srivastava, ... Molecular biology and evolution 39 (9), msac196, 2022 | 9 | 2022 |
| COVID-3D: An online resource to explore the structural distribution of genetic variation in SARS-CoV-2 and its implication on therapeutic development S Portelli, M Olshansky, CHM Rodrigues, EN D’Souza, Y Myung, M Silk, ... bioRxiv, 2020.05. 29.124610, 2020 | 7 | 2020 |
| Exploring protein supersecondary structure through changes in protein folding, stability, and flexibility DEV Pires, CHM Rodrigues, ATS Albanaz, M Karmakar, Y Myung, ... Protein supersecondary structures: methods and protocols, 173-185, 2019 | 6 | 2019 |
