Juan Nogales
Juan Nogales
Scientific Staff at CSIC
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Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis
J Nogales, S Gudmundsson, EM Knight, BO Palsson, I Thiele
Proceedings of the National Academy of Sciences 109 (7), 2678-2683, 2012
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory
J Nogales, BØ Palsson, I Thiele
BMC systems biology 2 (1), 1-20, 2008
Optimizing genome-scale network reconstructions
J Monk, J Nogales, BO Palsson
Nature biotechnology 32 (5), 447-452, 2014
Aerobic degradation of aromatic compounds
E Díaz, JI Jiménez, J Nogales
Current opinion in biotechnology 24 (3), 431-442, 2013
Growth phase‐dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome‐wide DNA microarray
L Yuste, AB Hervás, I Canosa, R Tobes, JI Jiménez, J Nogales, ...
Environmental microbiology 8 (1), 165-177, 2006
Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii
H Nagarajan, M Sahin, J Nogales, H Latif, DR Lovley, A Ebrahim, ...
Microbial cell factories 12 (1), 1-13, 2013
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida
J Nogales, Á Canales, J Jiménez‐Barbero, B Serra, JM Pingarrón, ...
Molecular microbiology 79 (2), 359-374, 2011
Do genome‐scale models need exact solvers or clearer standards?
A Ebrahim, E Almaas, E Bauer, A Bordbar, AP Burgard, RL Chang, ...
Molecular systems biology 11 (10), 831, 2015
Characterization of the last step of the aerobic phenylacetic acid degradation pathway
J Nogales, R Macchi, F Franchi, D Barzaghi, C Fernandez, JL Garcia, ...
Microbiology 153 (2), 357-365, 2007
Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440: the prototype of a new subgroup of extradiol dioxygenases
J Nogales, Á Canales, J Jiménez-Barbero, JL García, E Díaz
Journal of Biological Chemistry 280 (42), 35382-35390, 2005
Cyanobacteria as photosynthetic biocatalysts: a systems biology perspective
S Gudmundsson, J Nogales
Molecular BioSystems 11 (1), 60-70, 2015
Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features
Z Martín-Moldes, MT Zamarro, C Del Cerro, A Valencia, MJ Gómez, ...
Systematic and applied microbiology 38 (7), 462-471, 2015
High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities
J Nogales, J Mueller, S Gudmundsson, FJ Canalejo, E Duque, J Monk, ...
Environmental microbiology 22 (1), 255-269, 2020
Toward systems metabolic engineering in cyanobacteria: opportunities and bottlenecks
J Nogales, S Gudmundsson, I Thiele
Bioengineered 4 (3), 158-163, 2013
A genomic view of the catabolism of aromatic compounds in Pseudomonas
JI Jiménez, J Nogales, JL García, E Díaz
Handbook of hydrocarbon and lipid microbiology, 2010
The Crc/CrcZ‐CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism in Pseudomonas putida
R La Rosa, J Nogales, F Rojo
Environmental microbiology 17 (9), 3362-3378, 2015
Expanding the computable reactome in Pseudomonas putida reveals metabolic cycles providing robustness
J Nogales, S Gudmundsson, E Duque, JL Ramos, BO Palsson
BioRxiv, 139121, 2017
Outlining core pathways of amyloid toxicity in bacteria with the RepA-WH1 prionoid
L Molina-García, M Moreno-del Álamo, P Botias, Z Martín-Moldes, ...
Frontiers in microbiology 8, 539, 2017
Degradation of aromatic compounds in Pseudomonas: a systems biology view
J Nogales, JL García, E Díaz
Aerobic utilization of hydrocarbons, oils and lipids, Handbook of …, 2017
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