John Huddleston
John Huddleston
Verified email at fhcrc.org - Homepage
Title
Cited by
Cited by
Year
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
CS Chin, DH Alexander, P Marks, AA Klammer, J Drake, C Heiner, ...
Nature methods 10 (6), 563, 2013
30272013
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
13792015
Nextstrain: real-time tracking of pathogen evolution
J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ...
Bioinformatics 34 (23), 4121-4123, 2018
6272018
Resolving the complexity of the human genome using single-molecule sequencing
MJP Chaisson, J Huddleston, MY Dennis, PH Sudmant, M Malig, ...
Nature 517 (7536), 608-611, 2015
5792015
Global diversity, population stratification, and selection of human copy-number variation
PH Sudmant, S Mallick, BJ Nelson, F Hormozdiari, N Krumm, ...
Science 349 (6253), 2015
2632015
Long-read sequence assembly of the gorilla genome
D Gordon, J Huddleston, MJP Chaisson, CM Hill, ZN Kronenberg, ...
Science 352 (6281), 2016
2582016
Gibbon genome and the fast karyotype evolution of small apes
L Carbone, RA Harris, S Gnerre, KR Veeramah, B Lorente-Galdos, ...
Nature 513 (7517), 195-201, 2014
2582014
Reconstructing complex regions of genomes using long-read sequencing technology
J Huddleston, S Ranade, M Malig, F Antonacci, M Chaisson, L Hon, ...
Genome research 24 (4), 688-696, 2014
2282014
Genome sequencing of autism-affected families reveals disruption of putative noncoding regulatory DNA
TN Turner, F Hormozdiari, MH Duyzend, SA McClymont, PW Hook, ...
The American Journal of Human Genetics 98 (1), 58-74, 2016
2152016
Discovery and genotyping of structural variation from long-read haploid genome sequence data
J Huddleston, MJP Chaisson, KM Steinberg, W Warren, K Hoekzema, ...
Genome research 27 (5), 677-685, 2017
2122017
Long-read sequencing and de novo assembly of a Chinese genome
L Shi, Y Guo, C Dong, J Huddleston, H Yang, X Han, A Fu, Q Li, N Li, ...
Nature communications 7 (1), 1-10, 2016
1802016
Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation
CT Watson, KM Steinberg, J Huddleston, RL Warren, M Malig, J Schein, ...
The American Journal of Human Genetics 92 (4), 530-546, 2013
1702013
Evolution and diversity of copy number variation in the great ape lineage
PH Sudmant, J Huddleston, CR Catacchio, M Malig, LDW Hillier, C Baker, ...
Genome research 23 (9), 1373-1382, 2013
1222013
Single haplotype assembly of the human genome from a hydatidiform mole
KM Steinberg, VA Schneider, TA Graves-Lindsay, RS Fulton, R Agarwala, ...
Genome research 24 (12), 2066-2076, 2014
1132014
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
842020
The evolution and population diversity of human-specific segmental duplications
MY Dennis, L Harshman, BJ Nelson, O Penn, S Cantsilieris, J Huddleston, ...
Nature ecology & evolution 1 (3), 1-10, 2017
772017
Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability
F Antonacci, MY Dennis, J Huddleston, PH Sudmant, KM Steinberg, ...
Nature genetics 46 (12), 1293, 2014
772014
Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility
X Nuttle, G Giannuzzi, MH Duyzend, JG Schraiber, I Narvaiza, ...
Nature 536 (7615), 205-209, 2016
752016
An incomplete understanding of human genetic variation
J Huddleston, EE Eichler
Genetics 202 (4), 1251-1254, 2016
662016
Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants
JM Lee, J Huddleston, MB Doud, KA Hooper, NC Wu, T Bedford, ...
Proceedings of the National Academy of Sciences 115 (35), E8276-E8285, 2018
602018
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