| CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation V Narendra, PP Rocha, D An, R Raviram, JA Skok, EO Mazzoni, ... Science 347 (6225), 1017-1021, 2015 | 596 | 2015 |
| Capturing the onset of PRC2-mediated repressive domain formation O Oksuz, V Narendra, CH Lee, N Descostes, G LeRoy, R Raviram, ... Molecular cell 70 (6), 1149-1162. e5, 2018 | 236 | 2018 |
| Med12 is essential for early mouse development and for canonical Wnt and Wnt/PCP signaling PP Rocha, M Scholze, W Bleiß, H Schrewe Development 137 (16), 2723-2731, 2010 | 171 | 2010 |
| Cohesin loss alters adult hematopoietic stem cell homeostasis, leading to myeloproliferative neoplasms J Mullenders, B Aranda-Orgilles, P Lhoumaud, M Keller, J Pae, K Wang, ... Journal of Experimental Medicine 212 (11), 1833-1850, 2015 | 168 | 2015 |
| CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci Y Fu, PP Rocha, VM Luo, R Raviram, Y Deng, EO Mazzoni, JA Skok Nature communications 7 (1), 11707, 2016 | 154 | 2016 |
| MED12 regulates HSC-specific enhancers independently of mediator kinase activity to control hematopoiesis B Aranda-Orgilles, R Saldaña-Meyer, E Wang, E Trompouki, A Fassl, ... Cell stem cell 19 (6), 784-799, 2016 | 113 | 2016 |
| Low-grade astrocytoma mutations in IDH1, P53, and ATRX cooperate to block differentiation of human neural stem cells via repression of SOX2 AS Modrek, D Golub, T Khan, D Bready, J Prado, C Bowman, J Deng, ... Cell reports 21 (5), 1267-1280, 2017 | 94 | 2017 |
| 4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments JAS Ramya Raviram, Pedro P. Rocha, Christian L. Müller, Emily R. Miraldi ... Plos Computational Biology, 2016 | 93 | 2016 |
| Close proximity to Igh is a contributing factor to AID-mediated translocations PP Rocha, M Micsinai, JHR Kim, SL Hewitt, PP Souza, T Trimarchi, ... Molecular cell 47 (6), 873-885, 2012 | 70 | 2012 |
| Lack of functional and expression homology between human and mouse aldo-keto reductase 1C enzymes: implications for modelling human cancers P Veliça, NJ Davies, PP Rocha, H Schrewe, JP Ride, CM Bunce Molecular cancer 8, 1-12, 2009 | 68 | 2009 |
| Breaking TADs: insights into hierarchical genome organization PP Rocha, R Raviram, R Bonneau, JA Skok Epigenomics 7 (4), 523-526, 2015 | 61 | 2015 |
| Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness S Chakraborty, N Kopitchinski, Z Zuo, A Eraso, P Awasthi, R Chari, A Mitra, ... Nature genetics 55 (2), 280-290, 2023 | 53* | 2023 |
| Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions T Jiang, R Raviram, V Snetkova, PP Rocha, C Proudhon, S Badri, ... Nucleic acids research 44 (18), 8714-8725, 2016 | 50 | 2016 |
| Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate R Raviram, PP Rocha, VM Luo, E Swanzey, ER Miraldi, EB Chuong, ... Genome biology 19, 1-19, 2018 | 41 | 2018 |
| Mediator facilitates transcriptional activation and dynamic long-range contacts at the IgH locus during class switch recombination AS Thomas-Claudepierre, I Robert, PP Rocha, R Raviram, E Schiavo, ... Journal of Experimental Medicine 213 (3), 303-312, 2016 | 38 | 2016 |
| Wolf-Hirschhorn syndrome candidate 1 is necessary for correct hematopoietic and B cell development E Campos-Sanchez, N Deleyto-Seldas, V Dominguez, ... Cell reports 19 (8), 1586-1601, 2017 | 35 | 2017 |
| A damage-independent role for 53BP1 that impacts break order and Igh architecture during class switch recombination PP Rocha, R Raviram, Y Fu, JH Kim, VM Luo, A Aljoufi, E Swanzey, ... Cell reports 16 (1), 48-55, 2016 | 35 | 2016 |
| GATA3-Controlled Nucleosome Eviction Drives MYC Enhancer Activity in T-cell Development and Leukemia L Belver, AY Yang, R Albero, D Herranz, FG Brundu, SA Quinn, ... Cancer discovery 9 (12), 1774-1791, 2019 | 32 | 2019 |
| Alu insertion variants alter gene transcript levels LM Payer, JP Steranka, MS Kryatova, G Grillo, M Lupien, PP Rocha, ... Genome research 31 (12), 2236-2248, 2021 | 27 | 2021 |
| Linkage-specific deubiquitylation by OTUD5 defines an embryonic pathway intolerant to genomic variation DB Beck, MA Basar, AJ Asmar, JJ Thompson, H Oda, DT Uehara, K Saida, ... Science advances 7 (4), eabe2116, 2021 | 26 | 2021 |
