| Elevated and sustained expression of the transcription factors Egr1 and Egr2 controls NKT lineage differentiation in response to TCR signaling MP Seiler, R Mathew, MK Liszewski, CJ Spooner, K Barr, F Meng, ... Nature immunology 13 (3), 264-271, 2012 | 230 | 2012 |
| PLZF induces an intravascular surveillance program mediated by long-lived LFA-1–ICAM-1 interactions SY Thomas, ST Scanlon, KG Griewank, MG Constantinides, AK Savage, ... Journal of Experimental Medicine 208 (6), 1179-1188, 2011 | 201 | 2011 |
| Aristaless controls butterfly wing color variation used in mimicry and mate choice EL Westerman, NW VanKuren, D Massardo, A Tenger-Trolander, ... Current Biology 28 (21), 3469-3474. e4, 2018 | 89 | 2018 |
| Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis CJ Hsiao, PY Tung, JD Blischak, JE Burnett, KA Barr, KK Dey, ... Genome research 30 (4), 611-621, 2020 | 67 | 2020 |
| Egr2-dependent gene expression profiling and ChIP-Seq reveal novel biologic targets in T cell anergy Y Zheng, Y Zha, RM Spaapen, R Mathew, K Barr, A Bendelac, ... Molecular immunology 55 (3-4), 283-291, 2013 | 50 | 2013 |
| Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation R Elorbany, JM Popp, K Rhodes, BJ Strober, K Barr, G Qi, Y Gilad, ... PLoS genetics 18 (1), e1009666, 2022 | 32 | 2022 |
| Fully interpretable deep learning model of transcriptional control Y Liu, K Barr, J Reinitz Bioinformatics 36 (Supplement_1), i499-i507, 2020 | 28 | 2020 |
| Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation KA Barr, C Martinez, JR Moran, AR Kim, AF Ramos, J Reinitz BMC Systems Biology 11, 1-15, 2017 | 21 | 2017 |
| A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design CA Martinez, KA Barr, AR Kim, J Reinitz Methods 62 (1), 91-98, 2013 | 17 | 2013 |
| A sequence level model of an intact locus predicts the location and function of nonadditive enhancers KA Barr, J Reinitz PLoS One 12 (7), e0180861, 2017 | 13 | 2017 |
| Human embryoid bodies as a novel system for genomic studies of functionally diverse cell types K Rhodes, KA Barr, JM Popp, BJ Strober, A Battle, Y Gilad Elife 11, e71361, 2022 | 9 | 2022 |
| Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees BE Mittleman, S Pott, S Warland, K Barr, C Cuevas, Y Gilad Elife 10, e62548, 2021 | 9 | 2021 |
| An in silico analysis of robust but fragile gene regulation links enhancer length to robustness K Barr, J Reinitz, O Radulescu PLoS computational biology 15 (11), e1007497, 2019 | 9 | 2019 |
| The relationship between regulatory changes in cis and trans and the evolution of gene expression in humans and chimpanzees KA Barr, KL Rhodes, Y Gilad Genome Biology 24 (1), 207, 2023 | 2 | 2023 |
| Decoding CIS-Regulation of the Drosophila Even-Skipped Locus with Physical-Chemical Models and Synthetic Enhancers KA Barr The University of Chicago, 2017 | 2 | 2017 |
| Embryoid bodies facilitate comparative analysis of gene expression in humans and chimpanzees across dozens of cell types KA Barr, KL Rhodes, Y Gilad bioRxiv, 2022.07. 20.500831, 2022 | 1 | 2022 |
| Elevated and sustained expression of the transcription factors Egr1 and Egr2 controls NKT lineage differentiation in response to TCR signaling MP Seiler, R Mathew, MK Liszewski, C Spooner, K Barr, F Meng, H Singh, ... Nature Immunology 14 (4), 413, 2013 | 1 | 2013 |
| Methods of Using Multi-Tissue Organoids KL Rhodes, KA Barr, Y Gilad US Patent App. 18/067,192, 2023 | | 2023 |
| Guided Differentiation of Pluripotent Stem Cells for Cardiac Cell Diversity E McIntire, KA Barr, NM Gonzales, Y Gilad bioRxiv, 2023 | | 2023 |
| Anin silicoanalysis of robust but fragile gene regulation links enhancer length to robustness KA Barr, J Reinitz, O Radulescu | | 2019 |
