| Statistical analysis and prediction of protein–protein interfaces AJ Bordner, R Abagyan Proteins: Structure, Function, and Bioinformatics 60 (3), 353-366, 2005 | 221 | 2005 |
| Large‐scale prediction of protein geometry and stability changes for arbitrary single point mutations AJ Bordner, RA Abagyan Proteins: Structure, Function, and Bioinformatics 57 (2), 400-413, 2004 | 147 | 2004 |
| Boundary element solution of the linear Poisson–Boltzmann equation and a multipole method for the rapid calculation of forces on macromolecules in solution AJ Bordner, GA Huber Journal of computational chemistry 24 (3), 353-367, 2003 | 102 | 2003 |
| Accurate Transferable Model for Water, n-Octanol, and n-Hexadecane Solvation Free Energies AJ Bordner, CN Cavasotto, RA Abagyan The Journal of Physical Chemistry B 106 (42), 11009-11015, 2002 | 88 | 2002 |
| Ab initio prediction of peptide‐MHC binding geometry for diverse class I MHC allotypes AJ Bordner, R Abagyan Proteins: Structure, Function, and Bioinformatics 63 (3), 512-526, 2006 | 86 | 2006 |
| Calogero-Moser models. I: A new formulation AJ Bordner, E Corrigan, R Sasaki Progress of theoretical physics 100 (6), 1107-1129, 1998 | 84 | 1998 |
| Generalised Calogero-Moser models and universal Lax pair operators AJ Bordner, E Corrigan, R Sasaki Progress of theoretical physics 102 (3), 499-529, 1999 | 75 | 1999 |
| Calogero-Moser models. V: Supersymmetry and quantum lax pair AJ Bordner, NS Manton, R Sasaki Progress of Theoretical Physics 103 (3), 463-487, 2000 | 68 | 2000 |
| Adenine Nucleotide Translocase Is Acetylated in Vivo in Human Muscle: Modeling Predicts a Decreased ADP Affinity and Altered Control of Oxidative … C Mielke, N Lefort, CG McLean, JM Cordova, PR Langlais, AJ Bordner, ... Biochemistry 53 (23), 3817-3829, 2014 | 58 | 2014 |
| Predicting small ligand binding sites in proteins using backbone structure AJ Bordner Bioinformatics 24 (24), 2865-2871, 2008 | 57 | 2008 |
| Calogero-Moser models. II: Symmetries and foldings JA Bordner, R Sasaki, K Takasaki Progress of theoretical physics 101 (3), 487-518, 1999 | 54 | 1999 |
| Functional importance of a structurally distinct homodimeric complex of the family BG protein-coupled secretin receptor F Gao, KG Harikumar, M Dong, PCH Lam, PM Sexton, A Christopoulos, ... Molecular pharmacology 76 (2), 264-274, 2009 | 51 | 2009 |
| Predicting protein-protein binding sites in membrane proteins AJ Bordner BMC bioinformatics 10, 1-10, 2009 | 47 | 2009 |
| MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes AJ Bordner, HD Mittelmann BMC bioinformatics 11, 1-12, 2010 | 45 | 2010 |
| Protein docking using surface matching and supervised machine learning AJ Bordner, AA Gorin Proteins: Structure, Function, and Bioinformatics 68 (2), 488-502, 2007 | 42 | 2007 |
| Calogero-Moser models. III: Elliptic potentials and twisting AJ Bordner, R Sasaki Progress of theoretical physics 101 (4), 799-829, 1999 | 40 | 1999 |
| Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces AJ Bordner, AA Gorin BMC bioinformatics 9, 1-11, 2008 | 39 | 2008 |
| Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model AJ Bordner, HD Mittelmann BMC bioinformatics 11, 1-12, 2010 | 38 | 2010 |
| Immunogenic peptides, and method of identifying same V Katritch, A Bordner, R Deans, M Sumner US Patent App. 10/410,647, 2003 | 35 | 2003 |
| Direct derivation of van der Waals force field parameters from quantum mechanical interaction energies AJ Bordner, CN Cavasotto, RA Abagyan The Journal of Physical Chemistry B 107 (35), 9601-9609, 2003 | 31 | 2003 |
