| STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data B Kaminow, D Yunusov, A Dobin Biorxiv, 2021.05. 05.442755, 2021 | 145 | 2021 |
| High-throughput prediction of MHC class I and II neoantigens with MHCnuggets XM Shao, R Bhattacharya, J Huang, IKA Sivakumar, C Tokheim, L Zheng, ... Cancer immunology research 8 (3), 396-408, 2020 | 119 | 2020 |
| Open Science Discovery of Potent Non-Covalent SARS-CoV-2 Main Protease Inhibitors COVID Moonshot Consortium, H Achdout, A Aimon, DS Alonzi, R Arbon, ... BioRxiv, 2020.10. 29.339317, 2020 | 35 | 2020 |
| End-to-end differentiable construction of molecular mechanics force fields Y Wang, J Fass, B Kaminow, JE Herr, D Rufa, I Zhang, I Pulido, M Henry, ... Chemical Science 13 (41), 12016-12033, 2022 | 27 | 2022 |
| Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors ML Boby, D Fearon, M Ferla, M Filep, L Koekemoer, MC Robinson, ... Science 382 (6671), eabo7201, 2023 | 25 | 2023 |
| End-to-end differentiable molecular mechanics force field construction Y Wang, J Fass, B Kaminow, JE Herr, D Rufa, I Zhang, I Pulido, M Henry, ... arXiv preprint arXiv:2010.01196, 2020 | 13 | 2020 |
| High-throughput prediction of MHC class I and II neoantigens with MHCnuggets. Cancer Immunol Res.(2020) 8: 396–408. doi: 10.1158/2326-6066 XM Shao, R Bhattacharya, J Huang, IKA Sivakumar, C Tokheim, L Zheng, ... CIR-19-0464, 0 | 10 | |
| Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses B Kaminow, S Ballouz, J Gillis, A Dobin Genome Research 32 (4), 738-749, 2022 | 7 | 2022 |
| High-throughput prediction of MHC class I and II neoantigens with MHCnuggets. Cancer Immunol. Res. 8, 396–408 XM Shao, R Bhattacharya, J Huang, IKA Sivakumar, C Tokheim, L Zheng, ... | 7 | 2020 |
| STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data. bioRxiv. 2021.05. 05.442755 B Kaminow, D Yunusov, A Dobin, C Spring | 6 | 2021 |
| Virtue as the mean: Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses B Kaminow, S Ballouz, J Gillis, A Dobin BioRxiv, 2020.12. 22.423111, 2020 | 6 | 2020 |
| STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data. 2021; bioRxiv doi: 05 May 2021, preprint: not peer reviewedhttps B Kaminow, D Yunusov, A Dobin doi. org/10.1101/2021.05 5, 0 | 5 | |
| EspalomaCharge: Machine Learning-Enabled Ultrafast Partial Charge Assignment Y Wang, I Pulido, K Takaba, B Kaminow, J Scheen, L Wang, JD Chodera The Journal of Physical Chemistry A, 2024 | 3 | 2024 |
| Oncogenic Kras drives cancer-associated fibroblast heterogeneity and substate changes in pancreatic cancer JS Thalappillil, G Caligiuri, S Nadella, B Alagesan, GN Yordanov, ... Cancer Research 82 (12_Supplement), 3647-3647, 2022 | 2 | 2022 |
| An efficient protocol for accurately triaging molecules in the development of a SARS-CoV-2 main protease inhibitor AM Payne, B Kaminow, JD Chodera Biophysical Journal 123 (3), 471a, 2024 | | 2024 |
| Abstract C084: Oncogenic KRAS signaling drives the activation of tissue-resident fibroblasts and is required to maintain CAF heterogeneity in pancreatic cancer G Caligiuri, JS Thalappillil, M Shakiba, S Nadella, J Hinds, E Courtois, ... Cancer Research 82 (22_Supplement), C084-C084, 2022 | | 2022 |
| Oncogenic KRAS signaling drives the activation of tissue-resident fibroblasts and is required to maintain CAF heterogeneity in pancreatic cancer G Caligiuri, JS Thalappillil, M Shakiba, S Nadella, J Hinds, E Courtois, ... Cancer Research 82 (22), 168-168, 2022 | | 2022 |
| Abstract A33: High-throughput prediction of MHC Class I and Class II neoantigens with MHCnuggets XM Shao, R Bhattacharya, J Huang, A Sivakumar, C Tokheim, L Zheng, ... Cancer Immunology Research 8 (3_Supplement), A33-A33, 2020 | | 2020 |
