Jose Maria Carazo
Jose Maria Carazo
Professor, Spanish National Center for Biotechnology, CNB-CSIC
Verified email at cnb.csic.es
TitleCited byYear
GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
P Carmona-Saez, M Chagoyen, F Tirado, JM Carazo, A Pascual-Montano
Genome biology 8 (1), R3, 2007
5292007
XMIPP: a new generation of an open-source image processing package for electron microscopy
COS Sorzano, R Marabini, J Velázquez-Muriel, JR Bilbao-Castro, ...
Journal of structural biology 148 (2), 194-204, 2004
4482004
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information
R Nogales-Cadenas, P Carmona-Saez, M Vazquez, C Vicente, X Yang, ...
Nucleic acids research 37 (suppl_2), W317-W322, 2009
3942009
Nonsmooth nonnegative matrix factorization (nsNMF)
A Pascual-Montano, JM Carazo, K Kochi, D Lehmann, ...
IEEE transactions on pattern analysis and machine intelligence 28 (3), 403-415, 2006
3832006
Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization
SHW Scheres, H Gao, M Valle, GT Herman, PPB Eggermont, J Frank, ...
Nature methods 4 (1), 27, 2007
3692007
Image processing for electron microscopy single-particle analysis using XMIPP
SHW Scheres, R Núñez-Ramírez, COS Sorzano, JM Carazo, R Marabini
Nature protocols 3 (6), 977, 2008
3302008
Maximum-likelihood multi-reference refinement for electron microscopy images
SHW Scheres, M Valle, R Nuñez, COS Sorzano, R Marabini, GT Herman, ...
Journal of molecular biology 348 (1), 139-149, 2005
2502005
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree
J Dopazo, JM Carazo
Journal of molecular evolution 44 (2), 226-233, 1997
2361997
Consistent and elastic registration of histological sections using vector-spline regularization
I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ...
International Workshop on Computer Vision Approaches to Medical Image …, 2006
2252006
Biclustering of gene expression data by non-smooth non-negative matrix factorization
P Carmona-Saez, RD Pascual-Marqui, F Tirado, JM Carazo, ...
BMC bioinformatics 7 (1), 78, 2006
2222006
Xmipp: an image processing package for electron microscopy
R Marabini, IM Masegosa, MC San Martın, S Marco, JJ Fernandez, ...
Journal of structural biology 116 (1), 237-240, 1996
2191996
3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs)
R Marabini, GT Herman, JM Carazo
Ultramicroscopy 72 (1-2), 53-65, 1998
1991998
Quaternary structures of tumor suppressor p53 and a specific p53–DNA complex
H Tidow, R Melero, E Mylonas, SMV Freund, JG Grossmann, JM Carazo, ...
Proceedings of the National Academy of Sciences 104 (30), 12324-12329, 2007
1792007
A clustering approach to multireference alignment of single-particle projections in electron microscopy
COS Sorzano, JR Bilbao-Castro, Y Shkolnisky, M Alcorlo, R Melero, ...
Journal of structural biology 171 (2), 197-206, 2010
1712010
Integrated analysis of gene expression by association rules discovery
P Carmona-Saez, M Chagoyen, A Rodriguez, O Trelles, JM Carazo, ...
BMC bioinformatics 7 (1), 54, 2006
1612006
A structural model for the Escherichia coli DnaB helicase based on electron microscopy data
MC San Martin, NPJ Stamford, N Dammerova, NE Dixon, JM Carazo
Journal of structural biology 114 (3), 167-176, 1995
1581995
General morphology and capsid fine structure of African swine fever virus particles
JL Carrascosa, JM Carazo, AL Carrascosa, N García, A Santisteban, ...
Virology 132 (1), 160-172, 1984
1511984
Xmipp 3.0: an improved software suite for image processing in electron microscopy
JM De la Rosa-Trevín, J Otón, R Marabini, A Zaldivar, J Vargas, ...
Journal of structural biology 184 (2), 321-328, 2013
1432013
Insights into the molecular architecture of the 26S proteasome
S Nickell, F Beck, SHW Scheres, A Korinek, F Förster, K Lasker, ...
Proceedings of the National Academy of Sciences 106 (29), 11943-11947, 2009
1412009
Crystal structure of a near-full-length archaeal MCM: functional insights for an AAA+ hexameric helicase
AS Brewster, G Wang, X Yu, WB Greenleaf, JM Carazo, M Tjajadi, ...
Proceedings of the National Academy of Sciences 105 (51), 20191-20196, 2008
1372008
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Articles 1–20