| Dynamic regulation of HIV-1 mRNA populations analyzed by single-molecule enrichment and long-read sequencing KE Ocwieja, S Sherrill-Mix, R Mukherjee, R Custers-Allen, P David, ... Nucleic acids research 40 (20), 10345-10355, 2012 | 180 | 2012 |
| CMV reactivation drives posttransplant T-cell reconstitution and results in defects in the underlying TCRβ repertoire Y Suessmuth, R Mukherjee, B Watkins, DT Koura, K Finstermeier, ... Blood, The Journal of the American Society of Hematology 125 (25), 3835-3850, 2015 | 178 | 2015 |
| Antiviral effects of autologous CD4 T cells genetically modified with a conditionally replicating lentiviral vector expressing long antisense to HIV P Tebas, D Stein, G Binder-Scholl, R Mukherjee, T Brady, T Rebello, ... Blood, The Journal of the American Society of Hematology 121 (9), 1524-1533, 2013 | 141 | 2013 |
| Targeted single molecule mutation detection with massively parallel sequencing MT Gregory, JA Bertout, NG Ericson, SD Taylor, R Mukherjee, HS Robins, ... Nucleic acids research 44 (3), e22-e22, 2016 | 78 | 2016 |
| Switching between raltegravir resistance pathways analyzed by deep sequencing R Mukherjee, ST Jensen, F Male, K Bittinger, RL Hodinka, MD Miller, ... Aids 25 (16), 1951-1959, 2011 | 41 | 2011 |
| Cytomegalovirus exposure in the elderly does not reduce CD8 T cell repertoire diversity P Lindau, R Mukherjee, MV Gutschow, M Vignali, EH Warren, SR Riddell, ... The Journal of Immunology 202 (2), 476-483, 2019 | 38 | 2019 |
| HIV sequence variation associated with env antisense adoptive T-cell therapy in the hNSG mouse model R Mukherjee, G Plesa, S Sherrill-Mix, MW Richardson, JL Riley, ... Molecular Therapy 18 (4), 803-811, 2010 | 31 | 2010 |
| Correlated evolution of positions within mammalian cis elements R Mukherjee, P Evans, LN Singh, S Hannenhalli PLoS One 8 (2), e55521, 2013 | 3 | 2013 |
| Context-specific synthetic T cell promoters from assembled transcriptional elements J Appelbaum, J Wei, R Mukherjee, T Ishida, J Rosser, C Saxby, J Chase, ... Research Square, 2023 | 1 | 2023 |
| Exhaustive TCR Deep Sequencing Reveals That CMV Reactivation Fundamentally Resets Immune Reconstitution after Transplant and Results in Significant Deficits in the Effector … Y Suessmuth, D Koura, K Finstermeier, C Desmarais, J Horan, ... Biology of Blood and Marrow Transplantation 21 (2), S69-S70, 2015 | 1 | 2015 |
| Library Assembly and Selection of 4-1BB: zeta CAR Activation-Dependent Synthetic Promoters in Primary Human T Cells J Wei, R Mukherjee, W Rahfeldt, M Baldwin, C Sather, M Jensen MOLECULAR THERAPY 27 (4), 431-432, 2019 | | 2019 |
| CMV Reactivation Drives Post-transplant T Cell Reconstitution and Results In Defects In The Underlying TCRβ Repertoire Short Title: Defects in TCR Repertoire after CMV Reactivation Y Suessmuth, R Mukherjee, B Watkins, JA Conger, J Robertson, A Garrett, ... | | 2015 |
| Antiviral effects of autologous CD4 T cells genetically modified with a conditionally replicating lentiviral vector expressing long antisense to HIV (vol 121, pg 1524, 2013) P Tebas, D Stein, G Binder-Scholl, R Mukherjee, T Brady, T Rebello, ... BLOOD 124 (4), 663-663, 2014 | | 2014 |
| Despite large clonal expansions of cytotoxic T cells with age and chronic CMV exposure, the underlying repertoire appears completely normal, suggesting that holes in the T cell … R Mukherjee, P Lindau, C Desmarais, J DeGloria, H Utsugi, E Warren, ... The Journal of Immunology 192 (1_Supplement), 143.7-143.7, 2014 | | 2014 |
| TUAA0102: Third generation long‐read sequencing of HIV‐1 transcripts discloses cell type specific and temporal regulation of RNA splicing F Bushman, S Sherrill‐Mix, K Ocwieja, R Mukherjee, M Brown, J Chin, ... African Journal of Reproduction and Gynaecological Endoscopy 15, 2012 | | 2012 |
| TUPDE0203: Evaluation of the use of dried blood spots for viral load monitoring in resource‐limited settings in Zimbabwe D Sargeant, S Deverasetty, Y Luo, A Villahoz‐Baleta, S Zobrist, ... Journal of the International AIDS Society 15, 18438, 2012 | | 2012 |
| Third generation long-read sequencing of HIV-1 transcripts discloses cell type specific and temporal regulation of RNA splicing F Bushman, S Sherrill-Mix, K Ocwieja, R Mukherjee, M Brown, J Chin, ... JOURNAL OF THE INTERNATIONAL AIDS SOCIETY 15, 11-11, 2012 | | 2012 |
| Blood First Edition Paper, prepublished online December 20, 2012; DOI 10.1182/blood-2012-07-447250 P Tebas, D Stein, G Binder-Scholl, R Mukherjee, T Brady, T Rebello, ... | | 2012 |
| Viral diversity by deep sequencing: Approaches to analyzing effects of anti-HIV treatments R Mukherjee University of Pennsylvania, 2011 | | 2011 |
| Autologous hematopoietic progentor cells (HPC) mobilized by chemotherapy plus Filgrastim result in faster neutrophil engraftment compared to HPC mobilized with Filgrastim alone. F Momin, C Dales, S Hutchings, P Garner, S Dorr, T McCormick, ... BLOOD 94 (10), 340B-340B, 1999 | | 1999 |
