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Gero Doose, PhD
Gero Doose, PhD
ecSeq Bioinformatics
Verified email at bioinf.uni-leipzig.de - Homepage
Title
Cited by
Cited by
Year
The landscape of genomic alterations across childhood cancers
SN Gröbner, BC Worst, J Weischenfeldt, I Buchhalter, K Kleinheinz, ...
Nature 555 (7696), 321-327, 2018
12592018
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
S Hoffmann, C Otto, G Doose, A Tanzer, D Langenberger, S Christ, ...
Genome biology 15, 1-11, 2014
2832014
PROSO II–a new method for protein solubility prediction
P Smialowski, G Doose, P Torkler, S Kaufmann, D Frishman
The FEBS journal 279 (12), 2192-2200, 2012
2162012
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ...
Nature genetics 47 (11), 1316-1325, 2015
1402015
Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer
SH Bernhart, H Kretzmer, LM Holdt, F Jühling, O Ammerpohl, ...
Scientific reports 6 (1), 37393, 2016
1152016
Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma
C López, K Kleinheinz, SM Aukema, M Rohde, SH Bernhart, ...
Nature communications 10 (1), 1459, 2019
1142019
MINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells
G Doose, A Haake, SH Bernhart, C López, S Duggimpudi, F Wojciech, ...
Proceedings of the National Academy of Sciences 112 (38), E5261-E5270, 2015
1042015
MYC/MIZ1-dependent gene repression inversely coordinates the circadian clock with cell cycle and proliferation
A Shostak, B Ruppert, N Ha, P Bruns, UH Toprak, R Eils, M Schlesner, ...
Nature communications 7 (1), 11807, 2016
1012016
RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas
M Kunz, H Löffler-Wirth, M Dannemann, E Willscher, G Doose, J Kelso, ...
Oncogene 37 (47), 6136-6151, 2018
912018
Relevance of ID3-TCF3-CCND3 pathway mutations in pediatric aggressive B-cell lymphoma treated according to the non-Hodgkin Lymphoma Berlin-Frankfurt-Münster protocols
M Rohde, BR Bonn, M Zimmermann, J Lange, A Möricke, W Klapper, ...
Haematologica 102 (6), 1091, 2017
652017
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ...
Scientific reports 6 (1), 34589, 2016
612016
The genomic and transcriptional landscape of primary central nervous system lymphoma
J Radke, N Ishaque, R Koll, Z Gu, E Schumann, L Sieverling, S Uhrig, ...
Nature Communications 13 (1), 2558, 2022
592022
Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas
D Hübschmann, K Kleinheinz, R Wagener, SH Bernhart, C López, ...
Leukemia 35 (7), 2002-2016, 2021
462021
The PCBP1 gene encoding poly(rc) binding protein i is recurrently mutated in Burkitt lymphoma
R Wagener, SM Aukema, M Schlesner, A Haake, B Burkhardt, A Claviez, ...
Genes, Chromosomes and Cancer 54 (9), 555-564, 2015
302015
Atypical RNAs in the coelacanth transcriptome
A Nitsche, G Doose, H Tafer, M Robinson, NR Saha, M Gerdol, A Canapa, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2014
242014
Detection of atherosclerosis by small RNA-sequencing analysis of extracellular vesicle enriched serum samples
A Hildebrandt, B Kirchner, AS Meidert, F Brandes, A Lindemann, G Doose, ...
Frontiers in Cell and Developmental Biology 9, 729061, 2021
222021
Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data
G Doose, M Alexis, R Kirsch, S Findeiß, D Langenberger, R Machné, ...
RNA biology 10 (7), 1204-1210, 2013
202013
uap: reproducible and robust HTS data analysis
C Kämpf, M Specht, A Scholz, SH Puppel, G Doose, K Reiche, J Schor, ...
BMC bioinformatics 20, 1-9, 2019
182019
The trouble with long-range base pairs in RNA folding
F Amman, SH Bernhart, G Doose, IL Hofacker, J Qin, PF Stadler, S Will
Advances in Bioinformatics and Computational Biology: 8th Brazilian …, 2013
172013
Gene expression profile of human T cells following a single stimulation of peripheral blood mononuclear cells with anti-CD3 antibodies
IG Sousa, KCR Simi, MM do Almo, MAG Bezerra, G Doose, T Raiol, ...
BMC genomics 20, 1-14, 2019
142019
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