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Samuel Minot, PhD
Samuel Minot, PhD
Fred Hutch
Verified email at fredhutch.org - Homepage
Title
Cited by
Cited by
Year
The human gut virome: inter-individual variation and dynamic response to diet
S Minot, R Sinha, J Chen, H Li, SA Keilbaugh, GD Wu, JD Lewis, ...
Genome research 21 (10), 1616-1625, 2011
10312011
Rapid evolution of the human gut virome
S Minot, A Bryson, C Chehoud, GD Wu, JD Lewis, FD Bushman
Proceedings of the National Academy of Sciences 110 (30), 12450-12455, 2013
6162013
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ...
Genome biology 18, 1-19, 2017
3012017
The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome
GD Hannigan, JS Meisel, AS Tyldsley, Q Zheng, BP Hodkinson, ...
MBio 6 (5), 10.1128/mbio. 01578-15, 2015
2482015
Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer
JL Galeano Niño, H Wu, KD LaCourse, AG Kempchinsky, A Baryiames, ...
Nature 611 (7937), 810-817, 2022
2052022
Hypervariable loci in the human gut virome
S Minot, S Grunberg, GD Wu, JD Lewis, FD Bushman
Proceedings of the National Academy of Sciences 109 (10), 3962-3966, 2012
2002012
Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
A Kilianski, JL Haas, EJ Corriveau, AT Liem, KL Willis, DR Kadavy, ...
Gigascience 4 (1), s13742-015-0051-z, 2015
1922015
One codex: a sensitive and accurate data platform for genomic microbial identification
SS Minot, N Krumm, NB Greenfield
BioRxiv, 027607, 2015
1472015
MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach
BL Brown, M Watson, SS Minot, MC Rivera, RB Franklin
Gigascience 6 (3), gix007, 2017
1452017
Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity
S Minot, MB Melo, F Li, D Lu, W Niedelman, SS Levine, JPJ Saeij
Proceedings of the National Academy of Sciences 109 (33), 13458-13463, 2012
1112012
RNAseq Analysis of the Parasitic Nematode Strongyloides stercoralis Reveals Divergent Regulation of Canonical Dauer Pathways
JD Stoltzfus, S Minot, M Berriman, TJ Nolan, JB Lok
PLoS neglected tropical diseases 6 (10), e1854, 2012
932012
Validation of high throughput sequencing and microbial forensics applications
B Budowle, ND Connell, A Bielecka-Oder, RR Colwell, CR Corbett, ...
Investigative genetics 5, 1-18, 2014
762014
Global divergence of the human follicle mite Demodex folliculorum: persistent associations between host ancestry and mite lineages
MF Palopoli, DJ Fergus, S Minot, DT Pei, WB Simison, I Fernandez-Silva, ...
Proceedings of the National Academy of Sciences 112 (52), 15958-15963, 2015
682015
Metagenomic analysis reveals clinical SARS-CoV-2 infection and bacterial or viral superinfection and colonization
V Peddu, RC Shean, H Xie, L Shrestha, GA Perchetti, SS Minot, ...
Clinical chemistry 66 (7), 966-972, 2020
642020
Colonization of the live biotherapeutic product VE303 and modulation of the microbiota and metabolites in healthy volunteers
M Dsouza, R Menon, E Crossette, SK Bhattarai, J Schneider, YG Kim, ...
Cell Host & Microbe 30 (4), 583-598. e8, 2022
622022
Complete mitochondrial genomes of the human follicle mites Demodex brevis and D. folliculorum: novel gene arrangement, truncated tRNA genes, and ancient …
MF Palopoli, S Minot, D Pei, A Satterly, J Endrizzi
BMC genomics 15, 1-15, 2014
482014
The cancer chemotherapeutic 5-fluorouracil is a potent Fusobacterium nucleatum inhibitor and its activity is modified by intratumoral microbiota
KD LaCourse, M Zepeda-Rivera, AG Kempchinsky, A Baryiames, ...
Cell reports 41 (7), 2022
462022
Conservation of gene cassettes among diverse viruses of the human gut
S Minot, GD Wu, JD Lewis, FD Bushman
Public Library of Science 7 (8), e42342, 2012
432012
Human tumor-infiltrating MAIT cells display hallmarks of bacterial antigen recognition in colorectal cancer
S Li, Y Simoni, E Becht, CY Loh, N Li, D Lachance, SL Koo, TP Lim, ...
Cell Reports Medicine 1 (3), 2020
422020
Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease
SS Minot, AD Willis
Microbiome 7, 1-10, 2019
392019
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