| CATH: increased structural coverage of functional space I Sillitoe, N Bordin, N Dawson, VP Waman, P Ashford, HM Scholes, ... Nucleic Acids Research 49 (D1), D266-D273, 2021 | 302 | 2021 |
| SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals SD Lam, N Bordin, VP Waman, H Scholes, P Ashford, N Sen, L van Dorp, ... Scientific Reports 10 (1), 16471, 2020 | 143 | 2020 |
| Biocontrol traits of Bacillus licheniformis GL174, a culturable endophyte of Vitis vinifera cv. Glera S Nigris, E Baldan, A Tondello, F Zanella, N Vitulo, G Favaro, V Guidolin, ... BMC Microbiology 18 (1), 133, 2018 | 62 | 2018 |
| Contrastive learning on protein embeddings enlightens midnight zone M Heinzinger, M Littmann, I Sillitoe, N Bordin, C Orengo, B Rost NAR Genomics and Bioinformatics 4 (2), lqac043, 2022 | 55 | 2022 |
| AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms N Bordin, I Sillitoe, V Nallapareddy, C Rauer, SD Lam, VP Waman, N Sen, ... Communications Biology 6 (1), 160, 2023 | 51 | 2023 |
| Planctomycetes attached to algal surfaces: Insight into their genomes M Faria, N Bordin, J Kizina, J Harder, D Devos, OM Lage Genomics, 2017 | 51 | 2017 |
| Novel machine learning approaches revolutionize protein knowledge N Bordin, C Dallago, M Heinzinger, S Kim, M Littmann, C Rauer, ... Trends in Biochemical Sciences 48 (4), 345-359, 2023 | 28 | 2023 |
| SARS-CoV-2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms SI O’Donoghue, A Schafferhans, N Sikta, C Stolte, S Kaur, BK Ho, ... Molecular Systems Biology 17 (9), e10079, 2021 | 27 | 2021 |
| Pex24 and Pex32 are required to tether peroxisomes to the ER for organelle biogenesis, positioning and segregation in yeast F Wu, R de Boer, AM Krikken, A Akşit, N Bordin, DP Devos, IJ van der Klei Journal of Cell Science 133 (16), 2020 | 26 | 2020 |
| Clustering FunFams using sequence embeddings improves EC purity M Littmann, N Bordin, M Heinzinger, K Schütze, C Dallago, C Orengo, ... Bioinformatics 37 (20), 3449-3455, 2021 | 24 | 2021 |
| Tracing Evolution Through Protein Structures: Nature Captured in a Few Thousand Folds N Bordin, I Sillitoe, JG Lees, C Orengo Front. Mol. Biosci. 8: 668184. doi: 10.3389/fmolb, 2021 | 24 | 2021 |
| CATHe: Detection of remote homologues for CATH superfamilies using embeddings from protein language models V Nallapareddy, N Bordin, I Sillitoe, M Heinzinger, M Littmann, VP Waman, ... Bioinformatics 39 (1), btad029, 2023 | 23 | 2023 |
| PVCbase: an integrated web resource for the PVC bacterial proteomes N Bordin, JC González-Sánchez, DP Devos Database 2018, bay042, 2018 | 20 | 2018 |
| Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs N Sen, I Anishchenko, N Bordin, I Sillitoe, S Velankar, D Baker, C Orengo Briefings in Bioinformatics 23 (4), bbac187, 2022 | 19* | 2022 |
| Closely related Lak megaphages replicate in the microbiomes of diverse animals MA Crisci, LX Chen, AE Devoto, AL Borges, N Bordin, R Sachdeva, A Tett, ... iScience, 102875, 2021 | 17 | 2021 |
| The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors M Varadi, N Bordin, C Orengo, S Velankar Current Opinion in Structural Biology 79, 102543, 2023 | 14 | 2023 |
| Hansenula polymorpha Pex37 is a peroxisomal membrane protein required for organelle fission and segregation R Singh, S Manivannan, AM Krikken, R de Boer, N Bordin, DP Devos, ... The FEBS Journal 287 (9), 1742-1757, 2020 | 14 | 2020 |
| Broad functional profiling of fission yeast proteins using phenomics and machine learning M Rodríguez-López, N Bordin, J Lees, H Scholes, S Hassan, Q Saintain, ... Elife 12, RP88229, 2023 | 4 | 2023 |
| Chainsaw: protein domain segmentation with fully convolutional neural networks J Wells, A Hawkins-Hooker, N Bordin, I Sillitoe, B Paige, C Orengo bioRxiv, 2023.07. 19.549732, 2023 | 3 | 2023 |
| ICBdocker: a Docker image for proteome annotation and visualization N Bordin, DP Devos Bioinformatics 34 (22), 3937-3938, 2018 | 2 | 2018 |
Christine OrengoProfessor of Bioinformatics, University College LondonVerified email at biochem.ucl.ac.uk
