| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 564 | 2020 |
| Single-cell transcriptional profiles in human skeletal muscle AB Rubenstein, GR Smith, U Raue, G Begue, K Minchev, F Ruf-Zamojski, ... Scientific reports 10 (1), 229, 2020 | 208 | 2020 |
| Molecular transducers of physical activity consortium (MoTrPAC): Mapping the dynamic responses to exercise JA Sanford, CD Nogiec, ME Lindholm, JN Adkins, D Amar, S Dasari, ... Cell 181 (7), 1464-1474, 2020 | 171 | 2020 |
| Data-driven supervised learning of a viral protease specificity landscape from deep sequencing and molecular simulations MA Pethe, AB Rubenstein, SD Khare Proceedings of the National Academy of Sciences 116 (1), 168-176, 2019 | 28 | 2019 |
| Systematic Comparison of Amber and Rosetta Energy Functions for Protein Structure Evaluation AB Rubenstein, K Blacklock, H Nguyen, DA Case, SD Khare Journal of chemical theory and computation 14 (11), 6015-6025, 2018 | 24 | 2018 |
| Large-scale structure-based prediction and identification of novel protease substrates using computational protein design MA Pethe, AB Rubenstein, SD Khare Journal of molecular biology 429 (2), 220-236, 2017 | 22 | 2017 |
| Large-scale Structure-based Prediction and Identification of Novel Protease Substrates using Computational Protein Design MA Pethe, AB Rubenstein, SD Khare Journal of Molecular Biology 429 (2), 220-236, 2017 | 22 | 2017 |
| Attenuated activation of pulmonary immune cells in mRNA-1273–vaccinated hamsters after SARS-CoV-2 infection M Meyer, Y Wang, D Edwards, GR Smith, AB Rubenstein, P Ramanathan, ... The Journal of Clinical Investigation 131 (20), 2021 | 18 | 2021 |
| Skeletal muscle transcriptome response to a bout of endurance exercise in physically active and sedentary older adults AB Rubenstein, JM Hinkley, VD Nair, G Nudelman, RA Standley, F Yi, ... American Journal of Physiology-Endocrinology and Metabolism 322 (3), E260-E277, 2022 | 15 | 2022 |
| MFPred: Rapid and accurate prediction of protein-peptide recognition multispecificity using self-consistent mean field theory. AB Rubenstein, MA Pethe, SD Khare PLoS computational biology 13 (6), e1005614, 2017 | 15 | 2017 |
| Temporal dynamics of the multi-omic response to endurance exercise training across tissues MoTrPAC Study Group, D Amar, NR Gay, PM Jean Beltran, JN Adkins, ... bioRxiv, 2022.09. 21.508770, 2022 | 12 | 2022 |
| mRNA-1273 efficacy in a severe COVID-19 model: attenuated activation of pulmonary immune cells after challenge M Meyer, Y Wang, D Edwards, GR Smith, AB Rubenstein, P Ramanathan, ... bioRxiv, 2021.01. 25.428136, 2021 | 12 | 2021 |
| Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data X Chen, Y Wang, A Cappuccio, WS Cheng, FR Zamojski, VD Nair, ... Nature computational science 3 (7), 644-657, 2023 | 5 | 2023 |
| Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature A Cappuccio, DG Chawla, X Chen, AB Rubenstein, WS Cheng, W Mao, ... Cell Systems 13 (12), 989-1001. e8, 2022 | 3 | 2022 |
| Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise AB Rubenstein, GR Smith, Z Zhang, X Chen, TL Chambers, ... bioRxiv, 2023 | 1 | 2023 |
| Fast and slow muscle fiber transcriptome dynamics with lifelong endurance exercise U Raue, G Begue, K Minchev, B Jemiolo, KJ Gries, T Chambers, ... Journal of Applied Physiology 136 (2), 244-261, 2024 | | 2024 |
| THU082 Longitudinal Multiomics Characterization Of Paired Primary And Recurrent Aggressive Pituitary Tumors From The Same Patient Reveals Genomic Stability And Transcriptomic … K Taniguchi-Ponciano, A Chavez-Santoscoy, S Hinojosa-Alvarez, ... Journal of the Endocrine Society 7 (Supplement_1), bvad114. 1162, 2023 | | 2023 |
| Longitudinal multiomics characterization of paired primary and recurrent aggressive pituitary tumors from the same patient reveals genomic stability and transcriptomic and … K Taniguchi, A Chavez-Santoscoy, S Hinojosa-Alvarez, ... Endocrine Abstracts 90, 2023 | | 2023 |
| Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data X Chen, Y Wang, A Cappuccio, WS Cheng, FR Zamojski, VD Nair, ... Nature Computational Science 3 (9), 805, 2023 | | 2023 |
| Corrections & amendments X Chen, Y Wang, A Cappuccio, WS Cheng, FR Zamojski, VD Nair, ... | | 2023 |
Sagar KhareAssistant Professor of Chemistry and Chemical Biology, Rutgers UniversityVerified email at rutgers.edu
