Joćo Vieira Ribeiro
TitleCited byYear
QwikMD—integrative molecular dynamics toolkit for novices and experts
JV Ribeiro, RC Bernardi, T Rudack, JE Stone, JC Phillips, PL Freddolino, ...
Scientific reports 6 (1), 1-14, 2016
442016
Atomic detail visualization of photosynthetic membranes with GPU-accelerated ray tracing
JE Stone, M Sener, KL Vandivort, A Barragan, A Singharoy, I Teo, ...
Parallel computing 55, 17-27, 2016
272016
NAMD goes quantum: an integrative suite for hybrid simulations
MCR Melo, RC Bernardi, T Rudack, M Scheurer, C Riplinger, JC Phillips, ...
Nature methods 15 (5), 351, 2018
262018
vsLab—An implementation for virtual high‐throughput screening using AutoDock and VMD
N Cerqueira, J Ribeiro, PA Fernandes, MJ Ramos
International Journal of Quantum Chemistry 111 (6), 1208-1212, 2011
232011
Volarea–a bioinformatics tool to calculate the surface area and the volume of molecular systems
JV Ribeiro, JAC Tamames, NM Cerqueira, PA Fernandes, MJ Ramos
Chemical biology & drug design 82 (6), 743-755, 2013
222013
CompASM: an Amber-VMD alanine scanning mutagenesis plug-in
JV Ribeiro, NM Cerqueira, IS Moreira, PA Fernandes, MJ Ramos
Theoretical Chemistry Accounts 131 (10), 1271, 2012
162012
QwikMD-Gateway for Easy Simulation with VMD and NAMD
JV Ribeiro, RC Bernardi, T Rudack, K Schulten, E Tajkhorshid
Biophysical Journal 114 (3), 673a-674a, 2018
12018
chem‐path‐tracker: An Automated Tool to Analyze Chemical Motifs in Molecular Structures
JV Ribeiro, N Cerqueira, PA Fernandes, MJ Ramos
Chemical biology & drug design 84 (1), 44-53, 2014
12014
QwikMD-easy and fast molecular dynamics simulations with VMD and NAMD
JV Ribeiro, RC Bernardi, T Rudack, K Schulten, E Tajkhorshid
MDPI AG, 2017
2017
Making Classical and Hybrid (QM/MM) Molecular Dynamics Easy and Fast with QwikMD
JV Ribeiro, RC Bernardi, T Rudack, K Schulten
Biophysical Journal 112 (3), 448a, 2017
2017
Easy and Fast Setup of Molecular Dynamics Simulations: Combining VMD and NAMD for Experimentalists
JV Ribeiro, RC Bernardi, T Rudack, K Schulten
Biophysical Journal 110 (3), 641a, 2016
2016
Usage of Poly (NIPAm) in the biofuel production
J Ribeiro, R Bernardi, K Schulten
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 249, 2015
2015
vsLab-An Implementation for Virtual High-Throughput Screening Using AutoDock and VMD
J Ribeiro, PA Fernandes, MJ Ramos, NM Cerqueira
2011
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Articles 1–13