| SCENIC: single-cell regulatory network inference and clustering S Aibar, CB González-Blas, T Moerman, H Imrichova, G Hulselmans, ... Nature methods 14 (11), 1083-1086, 2017 | 658 | 2017 |
| iRegulon: from a gene list to a gene regulatory network using large motif and track collections A Verfaillie, H Imrichová, B Van de Sande, L Standaert, V Christiaens, ... PLoS Comput Biol 10 (7), e1003731, 2014 | 450 | 2014 |
| Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state A Verfaillie, H Imrichova, ZK Atak, M Dewaele, F Rambow, G Hulselmans, ... Nature communications 6 (1), 1-16, 2015 | 227 | 2015 |
| Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells P Laurette, T Strub, D Koludrovic, C Keime, S Le Gras, H Seberg, ... Elife 4, e06857, 2015 | 113 | 2015 |
| i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly H Imrichová, G Hulselmans, Z Kalender Atak, D Potier, S Aerts Nucleic acids research 43 (W1), W57-W64, 2015 | 87 | 2015 |
| The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes J Jacobs, M Atkins, K Davie, H Imrichova, L Romanelli, V Christiaens, ... Nature genetics 50 (7), 1011-1020, 2018 | 65 | 2018 |
| Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ... Genome research 26 (7), 882-895, 2016 | 45 | 2016 |
| Combined proteomics and transcriptomics identifies carboxypeptidase B1 and nuclear factor κB (NF-κB) associated proteins as putative biomarkers of metastasis in low grade … P Bouchal, M Dvořáková, T Roumeliotis, Z Bortlíček, I Ihnatová, ... Molecular & Cellular Proteomics 14 (7), 1814-1830, 2015 | 41 | 2015 |
| Breast cancer classification based on proteotypes obtained by SWATH mass spectrometry P Bouchal, OT Schubert, J Faktor, L Capkova, H Imrichova, K Zoufalova, ... Cell reports 28 (3), 832-843. e7, 2019 | 30 | 2019 |
| Identification of high-impact cis-regulatory mutations using transcription factor specific random forest models D Svetlichnyy, H Imrichova, M Fiers, ZK Atak, S Aerts PLoS Comput Biol 11 (11), e1004590, 2015 | 20 | 2015 |
| iRegulon and i‐cisTarget: Reconstructing Regulatory Networks Using Motif and Track Enrichment A Verfaillie, H Imrichova, R Janky, S Aerts Current protocols in bioinformatics 52 (1), 2.16. 1-2.16. 39, 2015 | 17 | 2015 |
| Rational discovery of molecular glue degraders via scalable chemical profiling C Mayor-Ruiz, S Bauer, M Brand, Z Kozicka, M Siklos, H Imrichova, ... Nature Chemical Biology 16 (11), 1199-1207, 2020 | 16 | 2020 |
| Selective Mediator dependence of cell-type-specifying transcription MG Jaeger, B Schwalb, SD Mackowiak, T Velychko, A Hanzl, H Imrichova, ... Nature Genetics 52 (7), 719-727, 2020 | 11 | 2020 |
| Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks ZK Atak, H Imrichova, D Svetlichnyy, G Hulselmans, V Christiaens, ... Genome medicine 9 (1), 1-13, 2017 | 9 | 2017 |
| Disturbed mitochondrial dynamics in CD8+ TILs reinforce T cell exhaustion YR Yu, H Imrichova, H Wang, T Chao, Z Xiao, M Gao, M Rincon-Restrepo, ... Nature Immunology 21 (12), 1540-1551, 2020 | 8 | 2020 |
| Combined proteomics and transcriptomics identifies carboxypeptidase B1 and NF-κB associated proteins as putative biomarkers of metastasis in low grade breast cancer P Bouchal, M Dvorakova, T Roumeliotis, Z Bortlicek, I Ihnatová, ... Molecular & Cellular Proteomics, 2015 | 5 | 2015 |
| Acute BAF perturbation causes immediate changes in chromatin accessibility S Schick, S Grosche, KE Kohl, D Drpic, MG Jaeger, NC Marella, ... Nature Genetics, 1-10, 2021 | 1 | 2021 |
| Rational discovery of molecular glue degraders via scalable chemical profiling (vol 16, pg 1199, 2020) C Mayor-Ruiz, S Bauer, M Brand, Z Kozicka, M Siklos, H Imrichova, ... NATURE CHEMICAL BIOLOGY, 2021 | | 2021 |
| Publisher Correction: Rational discovery of molecular glue degraders via scalable chemical profiling C Mayor-Ruiz, S Bauer, M Brand, Z Kozicka, M Siklos, H Imrichova, ... Nature Chemical Biology, 1-1, 2021 | | 2021 |
| Single-cell ATAC-seq during time-series experiment maps the regulatory dynamics of transcriptional state transition in melanoma L Minnoye, C Bravo Gonzalez-Blas, J Wouters, Z Kalender Atak, ... Single Cell Biology, Date: 2018/03/06-2018/03/08, Location: Wellcome Genome …, 2018 | | 2018 |
