Christian Otto
Christian Otto
ecSeq Bioinformatics
Verified email at bioinf.uni-leipzig.de
Title
Cited by
Cited by
Year
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
S Hoffmann, C Otto, S Kurtz, CM Sharma, P Khaitovich, J Vogel, ...
PLoS computational biology 5 (9), 2009
4722009
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
S Hoffmann, C Otto, G Doose, A Tanzer, D Langenberger, S Christ, ...
Genome biology 15 (2), R34, 2014
1642014
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ...
Nature genetics 47 (11), 1316, 2015
852015
Evolution of the let-7 microRNA Family
J Hertel, S Bartschat, A Wintsche, C Otto, PF Stadler
RNA biology 9 (3), 231-241, 2012
782012
metilene: Fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
F Jühling, H Kretzmer, SH Bernhart, C Otto, PF Stadler, S Hoffmann
Genome research 26 (2), 256-262, 2016
692016
Lacking alignments? The next-generation sequencing mapper segemehl revisited
C Otto, PF Stadler, S Hoffmann
Bioinformatics 30 (13), 1837-1843, 2014
642014
Fast and sensitive mapping of bisulfite-treated sequencing data
C Otto, PF Stadler, S Hoffmann
Bioinformatics 28 (13), 1698-1704, 2012
532012
Novel modes of RNA editing in mitochondria
S Moreira, M Valach, M Aoulad-Aissa, C Otto, G Burger
Nucleic acids research 44 (10), 4907-4919, 2016
372016
Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs
J Hackermüller, K Reiche, C Otto, N Hösler, C Blumert, K Brocke-Heidrich, ...
Genome biology 15 (3), R48, 2014
332014
Fluorescence correlation spectroscopy of the binding of nucleotide excision repair protein XPC-hHr23B with DNA substrates
Y Roche, D Zhang, GMJ Segers-Nolten, W Vermeulen, C Wyman, ...
Journal of fluorescence 18 (5), 987, 2008
262008
A first Glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus
L Rivarola‐Duarte, C Otto, F Jühling, S Schreiber, D Bedulina, L Jakob, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2014
212014
Detection of differentially expressed segments in tiling array data
C Otto, K Reiche, J Hackermüller
Bioinformatics 28 (11), 1471-1479, 2012
132012
Fast local fragment chaining using sum-of-pair gap costs.
C Otto, S Hoffmann, J Gorodkin, PF Stadler
Algorithms for Molecular Biology 6, 4, 2011
42011
Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods
P Drozdova, L Rivarola-Duarte, D Bedulina, D Axenov-Gribanov, ...
BMC genomics 20 (1), 1-14, 2019
32019
BAT: Bisulfite Analysis Toolkit
H Kretzmer, C Otto, S Hoffmann
F1000Research 6 (1490), 1490, 2017
22017
Method and device for displaying information with respect to selected image elements of images of a video sequence
C Otto, F Knischewski
US Patent 8,863,199, 2014
22014
Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species
Z Shatilina, P Drozdova, D Bedulina, L Rivarola-Duarte, S Schreiber, ...
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 33 …, 2020
2020
BAT: Bisulfite Analysis Toolkit [version 1; referees: 3 approved]
H Kretzmer, C Otto, S Hoffmann
2017
BAT: Bisulfite Analysis Toolkit
K Helene, C Otto, S Hoffmann
F1000Research 6, 2017
2017
BAT: BISULFITE ANALYSIS TOOLKIT
S HOFFMANN, H KRETZMER, C OTTO
F1000RESEARCH 6, 1490, 2017
2017
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Articles 1–20