Orin Shanks
Orin Shanks
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Community structures of fecal bacteria in cattle from different animal feeding operations
OC Shanks, CA Kelty, S Archibeque, M Jenkins, RJ Newton, SL McLellan, ...
Applied and environmental microbiology 77 (9), 2992-3001, 2011
3002011
Performance of forty-one microbial source tracking methods: a twenty-seven lab evaluation study
AB Boehm, LC Van De Werfhorst, JF Griffith, PA Holden, JA Jay, ...
Water research 47 (18), 6812-6828, 2013
2642013
Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR
RA Haugland, M Varma, M Sivaganesan, C Kelty, L Peed, OC Shanks
Systematic and Applied Microbiology 33 (6), 348-357, 2010
2112010
Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution
OC Shanks, E Atikovic, AD Blackwood, J Lu, RT Noble, JS Domingo, ...
Applied and environmental microbiology 74 (3), 745-752, 2008
1952008
Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples
HC Green, RA Haugland, M Varma, HT Millen, MA Borchardt, KG Field, ...
Applied and environmental microbiology 80 (10), 3086-3094, 2014
1812014
Animal DNA in PCR reagents plagues ancient DNA research
JA Leonard, O Shanks, M Hofreiter, E Kreuz, L Hodges, W Ream, ...
Journal of Archaeological Science 34 (9), 1361-1366, 2007
1702007
Quantitative PCR for genetic markers of human fecal pollution
OC Shanks, CA Kelty, M Sivaganesan, M Varma, RA Haugland
Applied and environmental microbiology 75 (17), 5507-5513, 2009
1642009
Comparison of the microbial community structures of untreated wastewaters from different geographic locales
OC Shanks, RJ Newton, CA Kelty, SM Huse, ML Sogin, SL McLellan
Applied and environmental microbiology 79 (9), 2906-2913, 2013
1412013
Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study
BA Layton, Y Cao, DL Ebentier, K Hanley, E Balleste, J Brandão, ...
Water Research 47 (18), 6897-6908, 2013
1272013
Quantitative CrAssphage PCR assays for human fecal pollution measurement
E Stachler, C Kelty, M Sivaganesan, X Li, K Bibby, OC Shanks
Environmental science & technology 51 (16), 9146-9154, 2017
1202017
Basin-wide analysis of the dynamics of fecal contamination and fecal source identification in Tillamook Bay, Oregon
OC Shanks, C Nietch, M Simonich, M Younger, D Reynolds, KG Field
Applied and Environmental Microbiology 72 (8), 5537-5546, 2006
1202006
Performance of PCR-Based Assays Targeting Bacteroidales Genetic Markers of Human Fecal Pollution in Sewage and Fecal Samples
OC Shanks, K White, CA Kelty, M Sivaganesan, J Blannon, M Meckes, ...
Environmental science & technology 44 (16), 6281-6288, 2010
1192010
Differential decay of human faecal Bacteroides in marine and freshwater
HC Green, OC Shanks, M Sivaganesan, RA Haugland, KG Field
Environmental microbiology 13 (12), 3235-3249, 2011
1142011
Decay of bacterial pathogens, fecal indicators, and real-time quantitative PCR genetic markers in manure-amended soils
SW Rogers, M Donnelly, L Peed, CA Kelty, S Mondal, Z Zhong, ...
Applied and Environmental Microbiology 77 (14), 4839-4848, 2011
1082011
Sewage reflects the distribution of human faecal Lachnospiraceae
SL McLellan, RJ Newton, JL Vandewalle, OC Shanks, SM Huse, AM Eren, ...
Environmental microbiology 15 (8), 2213-2227, 2013
1062013
Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples
OC Shanks, JW Santo Domingo, R Lamendella, CA Kelty, JE Graham
Applied and environmental microbiology 72 (6), 4054-4060, 2006
1062006
Identification of chicken-specific fecal microbial sequences using a metagenomic approach
J Lu, J Santo Domingo, OC Shanks
Water research 41 (16), 3561-3574, 2007
1022007
Dramatic improvements in beach water quality following gull removal
RR Converse, JL Kinzelman, EA Sams, E Hudgens, AP Dufour, H Ryu, ...
Environmental science & technology 46 (18), 10206-10213, 2012
962012
Improved strategies and optimization of calibration models for real-time PCR absolute quantification
M Sivaganesan, RA Haugland, EC Chern, OC Shanks
Water Research 44 (16), 4726-4735, 2010
872010
Identification of bacterial DNA markers for the detection of human fecal pollution in water
OC Shanks, JWS Domingo, J Lu, CA Kelty, JE Graham
Applied and Environmental Microbiology 73 (8), 2416-2422, 2007
842007
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