| Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography CF Tsai, CC Hsu, JN Hung, YT Wang, WK Choong, MY Zeng, PY Lin, ... Analytical chemistry 86 (1), 685-693, 2014 | 110 | 2014 |
| N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding T Pitti, CT Chen, HN Lin, WK Choong, WL Hsu, TY Sung Scientific reports 9 (1), 15975, 2019 | 61 | 2019 |
| Rapid high-pH reverse phase StageTip for sensitive small-scale membrane proteomic profiling BRT Dimayacyac-Esleta, CF Tsai, RB Kitata, PY Lin, WK Choong, TD Lin, ... Analytical chemistry 87 (24), 12016-12023, 2015 | 58 | 2015 |
| A data-independent acquisition-based global phosphoproteomics system enables deep profiling RB Kitata, WK Choong, CF Tsai, PY Lin, BS Chen, YC Chang, ... Nature Communications 12 (1), 2539, 2021 | 51 | 2021 |
| Phosphoproteomics reveals HMGA1, a CK2 substrate, as a drug-resistant target in non-small cell lung cancer YT Wang, SH Pan, CF Tsai, TC Kuo, YL Hsu, HY Yen, WK Choong, ... Scientific reports 7 (1), 44021, 2017 | 38 | 2017 |
| Mining missing membrane proteins by high-pH reverse-phase StageTip fractionation and multiple reaction monitoring mass spectrometry RB Kitata, BRT Dimayacyac-Esleta, WK Choong, CF Tsai, TD Lin, ... Journal of proteome research 14 (9), 3658-3669, 2015 | 31 | 2015 |
| Subcellular proteome landscape of human embryonic stem cells revealed missing membrane proteins MM Weldemariam, CL Han, F Shekari, RB Kitata, CY Chuang, WT Hsu, ... Journal of Proteome Research 17 (12), 4138-4151, 2018 | 16 | 2018 |
| MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification TM Lih, WK Choong, CC Chen, CW Cheng, HN Lin, CT Chen, HY Chang, ... Nucleic acids research 44 (W1), W575-W580, 2016 | 15 | 2016 |
| Informatics view on the challenges of identifying missing proteins from shotgun proteomics WK Choong, HY Chang, CT Chen, CF Tsai, WL Hsu, YJ Chen, TY Sung Journal of Proteome Research 14 (12), 5396-5407, 2015 | 15 | 2015 |
| Decoding the disease-associated proteins encoded in the human chromosome 4 LC Chen, MY Liu, YC Hsiao, WK Choong, HY Wu, WL Hsu, PC Liao, ... Journal of Proteome Research 12 (1), 33-44, 2013 | 11 | 2013 |
| MinProtMaxVP: Generating a minimized number of protein variant sequences containing all possible variant peptides for proteogenomic analysis WK Choong, JH Wang, TY Sung Journal of proteomics 223, 103819, 2020 | 8 | 2020 |
| WinProphet: a user-friendly pipeline management system for proteomics data analysis based on trans-proteomic pipeline CT Chen, CL Ko, WK Choong, JH Wang, WL Hsu, TY Sung Analytical chemistry 91 (15), 9403-9406, 2019 | 7 | 2019 |
| Decoding the effect of isobaric substitutions on identifying missing proteins and variant peptides in human proteome WK Choong, TSM Lih, YJ Chen, TY Sung Journal of Proteome Research 16 (12), 4415-4424, 2017 | 7 | 2017 |
| Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics JH Wang, WK Choong, CT Chen, TY Sung Scientific reports 12 (1), 2045, 2022 | 6 | 2022 |
| Multiaspect examinations of possible alternative mappings of identified variant peptides: a case study on the HEK293 cell line WK Choong, TY Sung ACS omega 7 (19), 16454-16467, 2022 | 4 | 2022 |
| Somatic mutation subtypes of lung adenocarcinoma in East Asian reveal divergent biological characteristics and therapeutic vulnerabilities WK Choong, TY Sung Iscience 24 (6), 2021 | 4 | 2021 |
| Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage CT Chen, JH Wang, CW Cheng, WC Hsu, CL Ko, WK Choong, TY Sung Scientific reports 11 (1), 2233, 2021 | 4 | 2021 |
| Evaluating the possibility of detecting variants in shotgun proteomics via LeTE-Fusion analysis pipeline TS Mamie Lih, WK Choong, YJ Chen, TY Sung Journal of proteome research 17 (9), 2937-2952, 2018 | 4 | 2018 |
| iHPDM: In Silico Human Proteome Digestion Map with Proteolytic Peptide Analysis and Graphical Visualizations WK Choong, CT Chen, JH Wang, TY Sung Journal of proteome research 18 (12), 4124-4132, 2019 | 3 | 2019 |
| Comparison of different variant sequence types coupled with decoy generation methods used in concatenated target-decoy database searches for proteogenomic research WK Choong, TY Sung Journal of Proteomics 231, 104021, 2021 | 2 | 2021 |
