Christopher M. Sullivan
Christopher M. Sullivan
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Genome sequencing and analysis of the model grass Brachypodium distachyon
International Brachypodium Initiative
Nature 463 (7282), 763, 2010
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
N Fahlgren, MD Howell, KD Kasschau, EJ Chapman, CM Sullivan, ...
PloS one 2 (2), e219, 2007
Genome-wide profiling and analysis of Arabidopsis siRNAs
KD Kasschau, N Fahlgren, EJ Chapman, CM Sullivan, JS Cumbie, ...
PLoS Biol 5 (3), e57, 2007
The genome of Eucalyptus grandis
AA Myburg, D Grattapaglia, GA Tuskan, U Hellsten, RD Hayes, ...
Nature 510 (7505), 356-362, 2014
Network discovery pipeline elucidates conserved time-of-day–specific cis-regulatory modules
TP Michael, TC Mockler, G Breton, C McEntee, A Byer, JD Trout, ...
PLoS Genet 4 (2), e14, 2008
Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection
H Garcia-Ruiz, A Takeda, EJ Chapman, CM Sullivan, N Fahlgren, ...
The Plant Cell 22 (2), 481-496, 2010
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
JT Cuperus, A Carbonell, N Fahlgren, H Garcia-Ruiz, RT Burke, A Takeda, ...
Nature structural & molecular biology 17 (8), 997, 2010
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA-and tasiRNA-directed targeting
MD Howell, N Fahlgren, EJ Chapman, JS Cumbie, CM Sullivan, SA Givan, ...
The Plant Cell 19 (3), 926-942, 2007
The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis
TC Mockler, TP Michael, HD Priest, R Shen, CM Sullivan, SA Givan, ...
Cold Spring Harbor symposia on quantitative biology 72, 353-363, 2007
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
N Fahlgren, S Jogdeo, KD Kasschau, CM Sullivan, EJ Chapman, ...
The Plant Cell 22 (4), 1074-1089, 2010
Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex
KM Smith, G Sancar, R Dekhang, CM Sullivan, S Li, AG Tag, C Sancar, ...
Eukaryotic cell 9 (10), 1549-1556, 2010
AGO1-miR173 complex initiates phased siRNA formation in plants
TA Montgomery, SJ Yoo, N Fahlgren, SD Gilbert, MD Howell, CM Sullivan, ...
Proceedings of the National Academy of Sciences 105 (51), 20055-20062, 2008
Computational and analytical framework for small RNA profiling by high-throughput sequencing
N Fahlgren, CM Sullivan, KD Kasschau, EJ Chapman, JS Cumbie, ...
Rna 15 (5), 992-1002, 2009
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing
JT Cuperus, TA Montgomery, N Fahlgren, RT Burke, T Townsend, ...
Proceedings of the National Academy of Sciences 107 (1), 466-471, 2010
Phytophthora-ID. org: a sequence-based Phytophthora identification tool
NJ Grünwald, FN Martin, MM Larsen, CM Sullivan, CM Press, MD Coffey, ...
Plant Disease 95 (3), 337-342, 2011
Heterochromatin is required for normal distribution of Neurospora crassa CenH3
KM Smith, PA Phatale, CM Sullivan, KR Pomraning, M Freitag
Molecular and cellular biology 31 (12), 2528-2542, 2011
mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans
C Zhang, TA Montgomery, HW Gabel, SEJ Fischer, CM Phillips, ...
Proceedings of the National Academy of Sciences 108 (4), 1201-1208, 2011
Update of ASRP: the Arabidopsis Small RNA Project database
TWH Backman, CM Sullivan, JS Cumbie, ZA Miller, EJ Chapman, ...
Nucleic acids research 36 (suppl_1), D982-D985, 2007
GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences
JS Cumbie, JA Kimbrel, Y Di, DW Schafer, LJ Wilhelm, SE Fox, ...
PloS one 6 (10), e25279, 2011
The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications
SEJ Fischer, TA Montgomery, C Zhang, N Fahlgren, PC Breen, A Hwang, ...
PLoS genetics 7 (11), e1002369, 2011
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