| SCENIC: single-cell regulatory network inference and clustering S Aibar, CB González-Blas, T Moerman, H Imrichova, G Hulselmans, ... Nature methods 14 (11), 1083-1086, 2017 | 658 | 2017 |
| iRegulon: from a gene list to a gene regulatory network using large motif and track collections A Verfaillie, H Imrichová, B Van de Sande, L Standaert, V Christiaens, ... PLoS Comput Biol 10 (7), e1003731, 2014 | 450 | 2014 |
| Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia K De Keersmaecker, ZK Atak, N Li, C Vicente, S Patchett, T Girardi, ... Nature genetics 45 (2), 186-190, 2013 | 349 | 2013 |
| Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state A Verfaillie, H Imrichova, ZK Atak, M Dewaele, F Rambow, G Hulselmans, ... Nature communications 6 (1), 1-16, 2015 | 227 | 2015 |
| Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia ZK Atak, V Gianfelici, G Hulselmans, K De Keersmaecker, AG Devasia, ... PLoS Genet 9 (12), e1003997, 2013 | 136 | 2013 |
| i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly H Imrichová, G Hulselmans, Z Kalender Atak, D Potier, S Aerts Nucleic acids research 43 (W1), W57-W64, 2015 | 87 | 2015 |
| Mapping gene regulatory networks from single-cell omics data MWEJ Fiers, L Minnoye, S Aibar, C Bravo González-Blas, Z Kalender Atak, ... Briefings in functional genomics 17 (4), 246-254, 2018 | 84 | 2018 |
| Identification of a novel, recurrent MBTD1‐CXorf67 fusion in low‐grade endometrial stromal sarcoma B Dewaele, J Przybyl, A Quattrone, J Finalet Ferreiro, V Vanspauwen, ... International journal of cancer 134 (5), 1112-1122, 2014 | 80 | 2014 |
| Mutation analysis of the tyrosine phosphatase PTPN2 in Hodgkin’s lymphoma and T-cell non-Hodgkin’s lymphoma M Kleppe, T Tousseyn, E Geissinger, ZK Atak, S Aerts, A Rosenwald, ... Haematologica 96 (11), 1723, 2011 | 78 | 2011 |
| High accuracy mutation detection in leukemia on a selected panel of cancer genes ZK Atak, K De Keersmaecker, V Gianfelici, E Geerdens, R Vandepoel, ... PloS one 7 (6), e38463, 2012 | 75 | 2012 |
| The Drosophila homologue of the amyloid precursor protein is a conserved modulator of Wnt PCP signaling A Soldano, Z Okray, P Janovska, K Tmejová, E Reynaud, A Claeys, J Yan, ... PLoS Biol 11 (5), e1001562, 2013 | 53 | 2013 |
| Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ... Genome research 26 (7), 882-895, 2016 | 45 | 2016 |
| Variations in the exome of the LNCaP prostate cancer cell line L Spans, ZK Atak, F Van Nieuwerburgh, D Deforce, E Lerut, S Aerts, ... The Prostate 72 (12), 1317-1327, 2012 | 21 | 2012 |
| Identification of high-impact cis-regulatory mutations using transcription factor specific random forest models D Svetlichnyy, H Imrichova, M Fiers, ZK Atak, S Aerts PLoS Comput Biol 11 (11), e1004590, 2015 | 20 | 2015 |
| Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ... Nature Cell Biology 22 (8), 986-998, 2020 | 14 | 2020 |
| Using cisTargetX to Predict Transcriptional Targets and Networks in Drosophila D Potier, ZK Atak, MN Sanchez, C Herrmann, S Aerts Gene Regulatory Networks, 291-314, 2012 | 14 | 2012 |
| Yin Yang 1 orchestrates a metabolic program required for both neural crest development and melanoma formation S Varum, A Baggiolini, L Zurkirchen, ZK Atak, C Cantù, E Marzorati, ... Cell Stem Cell 24 (4), 637-653. e9, 2019 | 11 | 2019 |
| Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks ZK Atak, H Imrichova, D Svetlichnyy, G Hulselmans, V Christiaens, ... Genome medicine 9 (1), 1-13, 2017 | 9 | 2017 |
| Decoding transcriptional states in cancer J Wouters, ZK Atak, S Aerts Current opinion in genetics & development 43, 82-92, 2017 | 7 | 2017 |
| Single-cell gene regulatory network analysis reveals new melanoma cell states and transition trajectories during phenotype switching J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ... BiorXiv, 715995, 2019 | 6 | 2019 |
Stein AertsProfessor @ University of Leuven; VIB Group LeaderVerified email at kuleuven.vib.be
