| Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography JR Stagno, Y Liu, YR Bhandari, CE Conrad, S Panja, M Swain, L Fan, ... Nature 541 (7636), 242-246, 2017 | 288 | 2017 |
| Aging-like spontaneous epigenetic silencing facilitates Wnt activation, stemness, and BrafV600E-induced tumorigenesis Y Tao, B Kang, DA Petkovich, YR Bhandari, J In, G Stein-O'Brien, X Kong, ... Cancer cell 35 (2), 315-328. e6, 2019 | 129 | 2019 |
| Structural differences between Pri-miRNA paralogs promote alternative drosha cleavage and expand target repertoires X Bofill-De Ros, WK Kasprzak, Y Bhandari, L Fan, Q Cavanaugh, M Jiang, ... Cell reports 26 (2), 447-459. e4, 2019 | 59 | 2019 |
| Small-angle X-ray scattering: a bridge between RNA secondary structures and three-dimensional topological structures X Fang, JR Stagno, YR Bhandari, X Zuo, YX Wang Current opinion in structural biology 30, 147-160, 2015 | 49 | 2015 |
| Molecular dynamics investigations of the α-helix to β-barrel conformational transformation in the RfaH transcription factor JB Gc, YR Bhandari, BS Gerstman, PP Chapagain The Journal of Physical Chemistry B 118 (19), 5101-5108, 2014 | 44 | 2014 |
| Exploring the diffusion of molecular oxygen in the red fluorescent protein mCherry using explicit oxygen molecular dynamics simulations CK Regmi, YR Bhandari, BS Gerstman, PP Chapagain The journal of physical chemistry B 117 (8), 2247-2253, 2013 | 41 | 2013 |
| Real‐time crystallographic studies of the adenine riboswitch using an X‐ray free‐electron laser JR Stagno, YR Bhandari, CE Conrad, Y Liu, YX Wang The FEBS journal 284 (20), 3374-3380, 2017 | 27 | 2017 |
| Synchronous RNA conformational changes trigger ordered phase transitions in crystals S Ramakrishnan, JR Stagno, CE Conrad, J Ding, P Yu, YR Bhandari, ... Nature communications 12 (1), 1762, 2021 | 22 | 2021 |
| Visualizing RNA conformational and architectural heterogeneity in solution J Ding, YT Lee, Y Bhandari, CD Schwieters, L Fan, P Yu, SG Tarosov, ... Nature communications 14 (1), 714, 2023 | 19 | 2023 |
| Topological structure determination of RNA using small-angle X-ray scattering YR Bhandari, L Fan, X Fang, GF Zaki, EA Stahlberg, W Jiang, ... Journal of molecular biology 429 (23), 3635-3649, 2017 | 17 | 2017 |
| Modeling RNA topological structures using small angle X-ray scattering YR Bhandari, W Jiang, EA Stahlberg, JR Stagno, YX Wang Methods 103, 18-24, 2016 | 13 | 2016 |
| Cooperative structural transitions in amyloid-like aggregation T Steckmann, YR Bhandari, PP Chapagain, BS Gerstman The Journal of Chemical Physics 146 (13), 2017 | 12 | 2017 |
| In J, Stein-O’Brien G, Kong X, Xie W, Zachos N, Maegawa S et al: Aging-like Spontaneous Epigenetic Silencing Facilitates Wnt Activation, Stemness, and Braf (V600E)-Induced … Y Tao, B Kang, DA Petkovich, YR Bhandari Cancer Cell 35 (2), 315-328, 2019 | 7 | 2019 |
| Structural propensities and entropy effects in peptide helix-coil transitions IE Chemmama, AC Pelea, YR Bhandari, PP Chapagain, BS Gerstman Physical Review E 86 (3), 031915, 2012 | 6 | 2012 |
| Abstract A008: DNA methyltransferase 3A promotes inflammation-associated gastric cancer growth and presents a therapy target for gastric cancer A Huber, C Dijkstra, Y Bhandari, H Easwaran, S Baylin, M Ernst, ... Cancer Research 82 (23_Supplement_2), A008-A008, 2022 | 2 | 2022 |
| Transcription factor expression repertoire basis for epigenetic and transcriptional subtypes of colorectal cancers YR Bhandari, V Krishna, R Powers, S Parmar, SJ Thursby, E Gupta, ... Proceedings of the National Academy of Sciences 120 (31), e2301536120, 2023 | 1 | 2023 |
| Lattice model simulations of the effects of the position of a peptide trigger segment on helix folding and dimerization YR Bhandari, PP Chapagain, BS Gerstman The Journal of Chemical Physics 137 (10), 2012 | 1 | 2012 |
| Free-energy landscapes and thermodynamic parameters of complex molecules from nonequilibrium simulation trajectories PP Chapagain, BS Gerstman, YR Bhandari, D Rimal Physical Review E 83 (6), 061905, 2011 | 1 | 2011 |
| Determining structures of individual RNA conformers using atomic force microscopy images and deep neural networks MFS Degenhardt, HF Degenhardt, YR Bhandari, YT Lee, J Ding, ... Research Square, 2023 | | 2023 |
| DNA methyltransferase 3A promotes inflammation-associated gastric cancer growth and presents a therapy target for gastric cancer. A Huber, C Dijkstra, Y Bhandari, H Easwaran, S Baylin, M Ernst, ... CANCER RESEARCH 82 (23), 2022 | | 2022 |
