Trevor Bedford
Trevor Bedford
Associate Professor, Fred Hutchinson Cancer Research Center
Verified email at bedford.io - Homepage
Title
Cited by
Cited by
Year
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
G Baele, P Lemey, T Bedford, A Rambaut, MA Suchard, AV Alekseyenko
Molecular biology and evolution 29 (9), 2157-2167, 2012
8212012
The early spread and epidemic ignition of HIV-1 in human populations
NR Faria, A Rambaut, MA Suchard, G Baele, T Bedford, MJ Ward, ...
science 346 (6205), 56-61, 2014
5802014
Nextstrain: real-time tracking of pathogen evolution
J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ...
Bioinformatics 34 (23), 4121-4123, 2018
5052018
Persistent HIV-1 replication maintains the tissue reservoir during therapy
R Lorenzo-Redondo, HR Fryer, T Bedford, EY Kim, J Archer, SLK Pond, ...
Nature 530 (7588), 51-56, 2016
472*2016
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ...
Nature 546 (7658), 406-410, 2017
3822017
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ...
Nature protocols 12 (6), 1261, 2017
3582017
Global circulation patterns of seasonal influenza viruses vary with antigenic drift
T Bedford, S Riley, IG Barr, S Broor, M Chadha, NJ Cox, RS Daniels, ...
Nature 523 (7559), 217-220, 2015
3142015
Viral phylodynamics
EM Volz, K Koelle, T Bedford
PLoS Comput Biol 9 (3), e1002947, 2013
2492013
Genetic diversity and protective efficacy of the RTS, S/AS01 malaria vaccine
DE Neafsey, M Juraska, T Bedford, D Benkeser, C Valim, A Griggs, ...
New England Journal of Medicine 373 (21), 2025-2037, 2015
2482015
Ebola virus epidemiology, transmission, and evolution during seven months in Sierra Leone
DJ Park, G Dudas, S Wohl, A Goba, SLM Whitmer, KG Andersen, ...
Cell 161 (7), 1516-1526, 2015
2452015
Virus genomes reveal factors that spread and sustained the Ebola epidemic
G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ...
Nature 544 (7650), 309-315, 2017
2382017
Integrating influenza antigenic dynamics with molecular evolution
T Bedford, MA Suchard, P Lemey, G Dudas, V Gregory, AJ Hay, ...
elife 3, e01914, 2014
2332014
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2
P Lemey, A Rambaut, T Bedford, N Faria, F Bielejec, G Baele, CA Russell, ...
PloS pathog 10 (2), e1003932, 2014
2282014
Genomic epidemiology reveals multiple introductions of Zika virus into the United States
ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ...
Nature 546 (7658), 401-405, 2017
2192017
Global migration dynamics underlie evolution and persistence of human influenza A (H3N2)
T Bedford, S Cobey, P Beerli, M Pascual
PLoS Pathog 6 (5), e1000918, 2010
1682010
Optimization of gene expression by natural selection
T Bedford, DL Hartl
Proceedings of the National Academy of Sciences 106 (4), 1133-1138, 2009
1412009
Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses
RA Neher, T Bedford, RS Daniels, CA Russell, BI Shraiman
Proceedings of the National Academy of Sciences 113 (12), E1701-E1709, 2016
1222016
nextflu: Real-time tracking of seasonal influenza virus evolution in humans
RA Neher, T Bedford
Bioinformatics 31 (21), 3546-3548, 2015
1022015
Eight challenges in phylodynamic inference
SDW Frost, OG Pybus, JR Gog, C Viboud, S Bonhoeffer, T Bedford
Epidemics 10, 88-92, 2015
952015
MERS-CoV spillover at the camel-human interface
G Dudas, LM Carvalho, A Rambaut, T Bedford
Elife 7, e31257, 2018
942018
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Articles 1–20