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Zhana Duren
Zhana Duren
Assistant Professor, Center for Human Genetics, Clemson University
Verified email at clemson.edu - Homepage
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Cited by
Cited by
Year
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
6592014
Modeling gene regulation from paired expression and chromatin accessibility data
Z Duren, X Chen, R Jiang, Y Wang, WH Wong
Proceedings of the National Academy of Sciences 114 (25), E4914-E4923, 2017
1382017
Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations
Z Duren, X Chen, M Zamanighomi, W Zeng, AT Satpathy, HY Chang, ...
Proceedings of the National Academy of Sciences 115 (30), 7723-7728, 2018
1142018
Subspace matching pursuit for sparse unmixing of hyperspectral data
Z Shi, W Tang, Z Duren, Z Jiang
IEEE Transactions on Geoscience and Remote Sensing 52 (6), 3256-3274, 2013
1112013
Unsupervised clustering and epigenetic classification of single cells
M Zamanighomi, Z Lin, T Daley, X Chen, Z Duren, A Schep, WJ Greenleaf, ...
Nature communications 9 (1), 2410, 2018
912018
TFAP2C-and p63-dependent networks sequentially rearrange chromatin landscapes to drive human epidermal lineage commitment
L Li, Y Wang, JL Torkelson, G Shankar, JM Pattison, HH Zhen, F Fang, ...
Cell Stem Cell 24 (2), 271-284. e8, 2019
562019
DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data
W Zeng, X Chen, Z Duren, Y Wang, R Jiang, WH Wong
Nature communications 10 (1), 4613, 2019
472019
Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage
X Zhang, D Hong, S Ma, T Ward, M Ho, R Pattni, Z Duren, A Stankov, ...
Proceedings of the National Academy of Sciences 117 (9), 4864-4873, 2020
422020
Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation
J Xin, H Zhang, Y He, Z Duren, C Bai, L Chen, X Luo, DS Yan, C Zhang, ...
Nature communications 11 (1), 4928, 2020
332020
Sparse hyperspectral unmixing using an approximate L0 norm
W Tang, Z Shi, Z Duren
Optik 125 (1), 31-38, 2014
262014
Time course regulatory analysis based on paired expression and chromatin accessibility data
Z Duren, X Chen, J Xin, Y Wang, WH Wong
Genome research 30 (4), 622-634, 2020
232020
Dynamic chromatin regulatory landscape of human CAR T cell exhaustion
DG Gennert, RC Lynn, JM Granja, EW Weber, MR Mumbach, Y Zhao, ...
Proceedings of the National Academy of Sciences 118 (30), e2104758118, 2021
202021
Modeling regulatory network topology improves genome-wide analyses of complex human traits
X Zhu, Z Duren, WH Wong
Nature communications 12 (1), 2851, 2021
162021
A method for scoring the cell type-specific impacts of noncoding variants in personal genomes
W Li, Z Duren, R Jiang, WH Wong
Proceedings of the National Academy of Sciences 117 (35), 21364-21372, 2020
132020
Clinical data analysis reveals three subytpes of gastric cancer
X Wang, Z Duren, C Zhang, L Chen, Y Wang
2012 IEEE 6th International Conference on Systems Biology (ISB), 315-320, 2012
112012
A systematic method to identify modulation of transcriptional regulation via chromatin activity reveals regulatory network during mESC differentiation
Z Duren, Y Wang
Scientific reports 6 (1), 1-12, 2016
92016
Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data
Z Duren, WS Lu, JG Arthur, P Shah, J Xin, F Meschi, ML Li, CM Nemec, ...
Nature Communications 12 (1), 4763, 2021
62021
Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG
Z Duren, F Chang, F Naqing, J Xin, Q Liu, WH Wong
Genome biology 23 (1), 1-19, 2022
52022
hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context
Z Feng, Z Duren, Z Xiong, S Wang, F Liu, WH Wong, Y Wang
Communications Biology 4 (1), 442, 2021
42021
Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana
Z Duren, Y Wang, J Wang, XM Zhao, L Lv, X Li, J Liu, XG Zhu, L Chen, ...
NPJ systems biology and applications 5 (1), 28, 2019
42019
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