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Sander Willems
Sander Willems
Bruker
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Integrative proteomic profiling reveals PRC2-dependent epigenetic crosstalk maintains ground-state pluripotency
G Van Mierlo, RAM Dirks, L De Clerck, AB Brinkman, M Huth, SL Kloet, ...
Cell stem cell 24 (1), 123-137. e8, 2019
1002019
The structural context of posttranslational modifications at a proteome-wide scale
I Bludau, S Willems, WF Zeng, MT Strauss, FM Hansen, MC Tanzer, ...
PLoS biology 20 (5), e3001636, 2022
692022
Statistical framework for detection of genetically modified organisms based on next generation sequencing
S Willems, MA Fraiture, D Deforce, SCJ De Keersmaecker, M De Loose, ...
Food chemistry 192, 788-798, 2016
642016
AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics
WF Zeng, XX Zhou, S Willems, C Ammar, M Wahle, I Bludau, E Voytik, ...
Nature Communications 13 (1), 7238, 2022
602022
Rapid and in-depth coverage of the (phospho-) proteome with deep libraries and optimal window design for dia-PASEF
P Skowronek, M Thielert, E Voytik, MC Tanzer, FM Hansen, S Willems, ...
Molecular & Cellular Proteomics, 100279, 2022
562022
Proteins involved in embryo-maternal interaction around the signalling of maternal recognition of pregnancy in the horse
K Smits, S Willems, K Van Steendam, M Van De Velde, V De Lange, ...
Scientific reports 8 (1), 5249, 2018
562018
Removing the hidden data dependency of DIA with predicted spectral libraries
B Van Puyvelde, S Willems, R Gabriels, S Daled, L De Clerck, ...
Proteomics 20 (3-4), 1900306, 2020
502020
Forensic tri-allelic SNP genotyping using nanopore sequencing
S Cornelis, Y Gansemans, AS Vander Plaetsen, J Weymaere, S Willems, ...
Forensic Science International: Genetics 38, 204-210, 2019
432019
Comparison of fractionation proteomics for local SWATH library building
E Govaert, K Van Steendam, S Willems, L Vossaert, M Dhaenens, ...
Proteomics 17 (15-16), 1700052, 2017
312017
Tackling aspecific side reactions during histone propionylation: The promise of reversing overpropionylation
P Meert, S Dierickx, E Govaert, L De Clerck, S Willems, M Dhaenens, ...
Proteomics 16 (14), 1970-1974, 2016
312016
Cov-MS: a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients
B Van Puyvelde, K Van Uytfanghe, O Tytgat, L Van Oudenhove, ...
Jacs Au 1 (6), 750-765, 2021
282021
AlphaPept, a modern and open framework for MS-based proteomics
MT Strauss, I Bludau, WF Zeng, E Voytik, C Ammar, J Schessner, R Ilango, ...
bioRxiv, 2021.07. 23.453379, 2021
262021
Extracting histones for the specific purpose of label‐free MS
E Govaert, K Van Steendam, E Scheerlinck, L Vossaert, P Meert, M Stella, ...
Proteomics 16 (23), 2937-2944, 2016
262016
Synchro-PASEF allows precursor-specific fragment ion extraction and interference removal in data-independent acquisition
P Skowronek, F Krohs, M Lubeck, G Wallmann, ECM Itang, P Koval, ...
Molecular & Cellular Proteomics 22 (2), 2023
242023
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics
B Van Puyvelde, S Daled, S Willems, R Gabriels, A Gonzalez de Peredo, ...
Scientific Data 9 (1), 126, 2022
232022
AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization
S Willems, E Voytik, P Skowronek, MT Strauss, M Mann
Molecular & Cellular Proteomics 20, 2021
232021
Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human
L De Clerck, J Taelman, M Popovic, S Willems, M Van der Jeught, ...
Scientific reports 9 (1), 17240, 2019
192019
hSWATH: Unlocking SWATH’s full potential for an untargeted histone perspective
L De Clerck, S Willems, R Noberini, C Restellini, B Van Puyvelde, ...
Journal of Proteome Research 18 (11), 3840-3849, 2019
192019
Flagging False Positives Following Untargeted LC–MS Characterization of Histone Post-Translational Modification Combinations
S Willems, M Dhaenens, E Govaert, L De Clerck, P Meert, C Van Neste, ...
Journal of Proteome Research 16 (2), 655-664, 2017
162017
Comprehensive histone epigenetics: A mass spectrometry based screening assay to measure epigenetic toxicity
S Verhelst, L De Clerck, S Willems, B Van Puyvelde, S Daled, D Deforce, ...
MethodsX 7, 101055, 2020
132020
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