| Impairment of DNA methylation maintenance is the main cause of global demethylation in naive embryonic stem cells F Von Meyenn, M Iurlaro, E Habibi, NQ Liu, A Salehzadeh-Yazdi, ... Molecular cell 62 (6), 848-861, 2016 | 251 | 2016 |
| A systematic survey of centrality measures for protein-protein interaction networks M Ashtiani, A Salehzadeh-Yazdi, Z Razaghi-Moghadam, H Hennig, ... BMC systems biology 12, 1-17, 2018 | 170 | 2018 |
| CentiServer: a comprehensive resource, web-based application and R package for centrality analysis M Jalili, A Salehzadeh-Yazdi, Y Asgari, SS Arab, M Yaghmaie, ... PloS one 10 (11), e0143111, 2015 | 115 | 2015 |
| Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation Y Asgari, Z Zabihinpour, A Salehzadeh-Yazdi, F Schreiber, ... Genomics 105 (5-6), 275-281, 2015 | 114 | 2015 |
| Evolution of centrality measurements for the detection of essential proteins in biological networks M Jalili, A Salehzadeh-Yazdi, S Gupta, O Wolkenhauer, M Yaghmaie, ... Frontiers in physiology 7, 375, 2016 | 79 | 2016 |
| Controllability in cancer metabolic networks according to drug targets as driver nodes Y Asgari, A Salehzadeh-Yazdi, F Schreiber, A Masoudi-Nejad PloS one 8 (11), e79397, 2013 | 69 | 2013 |
| HomoTarget: a new algorithm for prediction of microRNA targets in Homo sapiens H Ahmadi, A Ahmadi, S Azimzadeh-Jamalkandi, MA Shoorehdeli, ... Genomics 101 (2), 94-100, 2013 | 50 | 2013 |
| Computational models for clinical applications in personalized medicine—guidelines and recommendations for data integration and model validation CB Collin, T Gebhardt, M Golebiewski, T Karaderi, M Hillemanns, ... Journal of personalized medicine 12 (2), 166, 2022 | 34 | 2022 |
| Comprehensive functional enrichment analysis of male infertility SM Razavi, M Sabbaghian, M Jalili, A Divsalar, O Wolkenhauer, ... Scientific reports 7 (1), 15778, 2017 | 32 | 2017 |
| Enzyme-constrained models and omics analysis of Streptomyces coelicolor reveal metabolic changes that enhance heterologous production S Sulheim, T Kumelj, D van Dissel, A Salehzadeh-Yazdi, C Du, ... Iscience 23 (9), 2020 | 27 | 2020 |
| Unveiling network-based functional features through integration of gene expression into protein networks M Jalili, T Gebhardt, O Wolkenhauer, A Salehzadeh-Yazdi Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease 1864 (6 …, 2018 | 21 | 2018 |
| Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach A Salehzadeh-Yazdi, Y Asgari, AA Saboury, A Masoudi-Nejad PloS one 9 (11), e111686, 2014 | 14 | 2014 |
| Exploring the metabolic heterogeneity of cancers: A benchmark study of context-specific models M Jalili, M Scharm, O Wolkenhauer, M Damaghi, A Salehzadeh-Yazdi Journal of Personalized Medicine 11 (6), 496, 2021 | 13 | 2021 |
| CytoKavosh: a Cytoscape plug-in for finding network motifs in large biological networks A Masoudi-Nejad, M Ansariola, Z Razaghi Moghadam Kashani, ... Public Library of Science 7 (8), e43287, 2012 | 13 | 2012 |
| A metabolic model of intestinal secretions: the link between human microbiota and colorectal cancer progression P Salahshouri, M Emadi-Baygi, M Jalili, FM Khan, O Wolkenhauer, ... Metabolites 11 (7), 456, 2021 | 11 | 2021 |
| Meta-analysis of gene expression profiles in acute promyelocytic leukemia reveals involved pathways M Jalili, A Salehzadeh-Yazdi, S Mohammadi, M Yaghmaie, ... International Journal of Hematology-Oncology and Stem Cell Research 11 (1), 1, 2017 | 9 | 2017 |
| Cancerome: A hidden informative subnetwork of the diseasome M Jalili, A Salehzadeh-Yazdi, M Yaghmaie, A Ghavamzadeh, ... Computers in Biology and Medicine 76, 173-177, 2016 | 9 | 2016 |
| Computational structure analysis of biomacromolecule complexes by interface geometry S Mahdavi, A Salehzadeh-Yazdi, A Mohades, A Masoudi-Nejad Computational Biology and Chemistry 47, 16-23, 2013 | 9 | 2013 |
| Evolution of computational models in BioModels Database and the Physiome Model Repository M Scharm, T Gebhardt, V Touré, A Bagnacani, A Salehzadeh-Yazdi, ... BMC Systems Biology 12, 1-10, 2018 | 6 | 2018 |
| EU-STANDS4PM consortium; et al. Computational models for clinical applications in personalized medicine—Guidelines and recommendations for data integration and model validation CB Collin, T Gebhardt, M Golebiewski, T Karaderi, M Hillemanns, ... J. Pers. Med 12, 166, 2022 | 5 | 2022 |
