| Assigning protein functions by comparative genome analysis: protein phylogenetic profiles M Pellegrini, EM Marcotte, MJ Thompson, D Eisenberg, TO Yeates Proceedings of the National Academy of Sciences 96 (8), 4285-4288, 1999 | 2157 | 1999 |
| Detecting protein function and protein-protein interactions from genome sequences EM Marcotte, M Pellegrini, HL Ng, DW Rice, TO Yeates, D Eisenberg Science 285 (5428), 751-753, 1999 | 2016 | 1999 |
| Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning SJ Cokus, S Feng, X Zhang, Z Chen, B Merriman, CD Haudenschild, ... Nature 452 (7184), 215-219, 2008 | 1930 | 2008 |
| Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis X Zhang, J Yazaki, A Sundaresan, S Cokus, SWL Chan, H Chen, ... Cell 126 (6), 1189-1201, 2006 | 1622 | 2006 |
| A combined algorithm for genome-wide prediction of protein function EM Marcotte, M Pellegrini, MJ Thompson, TO Yeates, D Eisenberg Nature 402 (6757), 83-86, 1999 | 1144 | 1999 |
| Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures MH Chin, MJ Mason, W Xie, S Volinia, M Singer, C Peterson, ... Cell Stem Cell 5 (1), 111-123, 2009 | 1064 | 2009 |
| Conservation and divergence of methylation patterning in plants and animals S Feng, SJ Cokus, X Zhang, PY Chen, M Bostick, MG Goll, J Hetzel, J Jain, ... Proceedings of the National Academy of Sciences 107 (19), 8689-8694, 2010 | 917 | 2010 |
| Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency C Popp, W Dean, S Feng, SJ Cokus, S Andrews, M Pellegrini, ... Nature 463 (7284), 1101-1105, 2010 | 889 | 2010 |
| Relationship between nucleosome positioning and DNA methylation RK Chodavarapu, S Feng, YV Bernatavichute, PY Chen, H Stroud, Y Yu, ... Nature 466 (7304), 388-392, 2010 | 681 | 2010 |
| Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis X Zhang, O Clarenz, S Cokus, YV Bernatavichute, M Pellegrini, ... PLoS Biol 5 (5), e129, 2007 | 629 | 2007 |
| Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation SD Fouse, Y Shen, M Pellegrini, S Cole, A Meissner, L Van Neste, ... Cell stem cell 2 (2), 160-169, 2008 | 458 | 2008 |
| A census of protein repeats EM Marcotte, M Pellegrini, TO Yeates, D Eisenberg Journal of molecular biology 293 (1), 151-160, 1999 | 414 | 1999 |
| Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana X Zhang, YV Bernatavichute, S Cokus, M Pellegrini, SE Jacobsen Genome biology 10 (6), R62, 2009 | 410 | 2009 |
| Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming A Soufi, MF Garcia, A Jaroszewicz, N Osman, M Pellegrini, KS Zaret Cell 161 (3), 555-568, 2015 | 369 | 2015 |
| Prolinks: a database of protein functional linkages derived from coevolution PM Bowers, M Pellegrini, MJ Thompson, J Fierro, TO Yeates, D Eisenberg Genome biology 5 (5), R35, 2004 | 363 | 2004 |
| Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas NR Boyle, MD Page, B Liu, IK Blaby, D Casero, J Kropat, SJ Cokus, ... Journal of Biological Chemistry 287 (19), 15811-15825, 2012 | 340 | 2012 |
| Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana YV Bernatavichute, X Zhang, S Cokus, M Pellegrini, SE Jacobsen PloS one 3 (9), e3156, 2008 | 313 | 2008 |
| Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli S Atsumi, TY Wu, IMP Machado, WC Huang, PY Chen, M Pellegrini, ... Molecular systems biology 6 (1), 449, 2010 | 274 | 2010 |
| DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees S Foret, R Kucharski, M Pellegrini, S Feng, SE Jacobsen, GE Robinson, ... Proceedings of the National Academy of Sciences 109 (13), 4968-4973, 2012 | 256 | 2012 |
| RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival D González-Ballester, D Casero, S Cokus, M Pellegrini, SS Merchant, ... The Plant Cell 22 (6), 2058-2084, 2010 | 229 | 2010 |
Steven E. JacobsenUCLAVerified email at ucla.edu
