Andrey Tovchigrechko
Andrey Tovchigrechko
Director, Bioinformatics and Sequencing, BioNTech US
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Citado por
GRAMM-X public web server for protein–protein docking
A Tovchigrechko, IA Vakser
Nucleic acids research 34 (suppl_2), W310-W314, 2006
Genomic and functional adaptation in surface ocean planktonic prokaryotes
S Yooseph, KH Nealson, DB Rusch, JP McCrow, CL Dupont, M Kim, ...
Nature 468 (7320), 60-66, 2010
Functional tradeoffs underpin salinity-driven divergence in microbial community composition
CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll, ...
PloS one 9 (2), e89549, 2014
Development and testing of an automated approach to protein docking
A Tovchigrechko, IA Vakser
Proteins: Structure, Function, and Bioinformatics 60 (2), 296-301, 2005
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
Metagenomic exploration of viruses throughout the Indian Ocean
SJ Williamson, LZ Allen, HA Lorenzi, DW Fadrosh, D Brami, ...
Public Library of Science 7 (10), e42047, 2012
Docking of protein models
A Tovchigrechko, CA Wells, IA Vakser
Protein Science 11 (8), 1888-1896, 2002
Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis
SV Rajagopala, S Yooseph, DM Harkins, KJ Moncera, KB Zabokrtsky, ...
BMC genomics 17, 1-10, 2016
RsfA (YbeB) proteins are conserved ribosomal silencing factors
R Häuser, M Pech, J Kijek, H Yamamoto, B Titz, F Naeve, ...
PLoS genetics 8 (7), e1002815, 2012
How common is the funnel‐like energy landscape in protein‐protein interactions?
A Tovchigrechko, IA Vakser
Protein science 10 (8), 1572-1583, 2001
Dockground resource for studying protein–protein interfaces
D Douguet, HC Chen, A Tovchigrechko, IA Vakser
Bioinformatics 22 (21), 2612-2618, 2006
Differences in the nasopharyngeal microbiome during acute respiratory tract infection with human rhinovirus and respiratory syncytial virus in infancy
C Rosas-Salazar, MH Shilts, A Tovchigrechko, S Schobel, JD Chappell, ...
The Journal of infectious diseases 214 (12), 1924-1928, 2016
S. aureus evades macrophage killing through NLRP3-dependent effects on mitochondrial trafficking
TS Cohen, ML Boland, BB Boland, V Takahashi, A Tovchigrechko, Y Lee, ...
Cell reports 22 (9), 2431-2441, 2018
Towards a standard diet-induced and biopsy-confirmed mouse model of non-alcoholic steatohepatitis: Impact of dietary fat source
ML Boland, D Oró, KS Tølbøl, ST Thrane, JC Nielsen, TS Cohen, ...
World journal of gastroenterology 25 (33), 4904, 2019
DOCKGROUND system of databases for protein recognition studies: Unbound structures for docking
Y Gao, D Douguet, A Tovchigrechko, IA Vakser
Proteins: Structure, Function, and Bioinformatics 69 (4), 845-851, 2007
Minimally invasive sampling method identifies differences in taxonomic richness of nasal microbiomes in young infants associated with mode of delivery
MH Shilts, C Rosas-Salazar, A Tovchigrechko, EK Larkin, M Torralba, ...
Microbial ecology 71, 233-242, 2016
Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancy
C Rosas-Salazar, MH Shilts, A Tovchigrechko, S Schobel, JD Chappell, ...
Journal of Allergy and Clinical Immunology 142 (5), 1447-1456. e9, 2018
Nasopharyngeal microbiome in respiratory syncytial virus resembles profile associated with increased childhood asthma risk
C Rosas-Salazar, MH Shilts, A Tovchigrechko, JD Chappell, EK Larkin, ...
American journal of respiratory and critical care medicine 193 (10), 1180-1183, 2016
Parallelizing BLAST and SOM algorithms with MapReduce-MPI library
SJ Sul, A Tovchigrechko
2011 IEEE International Symposium on Parallel and Distributed Processing …, 2011
Microbial burden and viral exacerbations in a longitudinal multicenter COPD cohort
J Bouquet, DE Tabor, JS Silver, V Nair, A Tovchigrechko, MP Griffin, ...
Respiratory research 21, 1-13, 2020
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Artículos 1–20