Kieran Smallbone
Kieran Smallbone
MCISB / Mathematics / Computer Science, University of Manchester
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A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ...
Nature biotechnology 26 (10), 1155-1160, 2008
An assessment of sustainable housing affordability using a multiple criteria decision making method
E Mulliner, K Smallbone, V Maliene
Omega 41 (2), 270-279, 2013
Cellular adaptations to hypoxia and acidosis during somatic evolution of breast cancer
RA Gatenby, K Smallbone, PK Maini, F Rose, J Averill, RB Nagle, ...
British journal of cancer 97 (5), 646-653, 2007
Recon 2.2: from reconstruction to model of human metabolism
N Swainston, K Smallbone, H Hefzi, PD Dobson, J Brewer, M Hanscho, ...
Metabolomics 12, 1-7, 2016
Metabolic changes during carcinogenesis: potential impact on invasiveness
K Smallbone, RA Gatenby, RJ Gillies, PK Maini, DJ Gavaghan
Journal of theoretical biology 244 (4), 703-713, 2007
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
The role of acidity in solid tumour growth and invasion
K Smallbone, DJ Gavaghan, RA Gatenby, PK Maini
Journal of theoretical biology 235 (4), 476-484, 2005
Towards a genome-scale kinetic model of cellular metabolism
K Smallbone, E Simeonidis, N Swainston, P Mendes
BMC systems biology 4 (1), 6, 2010
Improving metabolic flux predictions using absolute gene expression data
K Smallbone, D Lee, WB Dunn, E Murabito, CL Winder, DB Kell, ...
BMC Systems Biology 6, 73, 2012
Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network
BD Heavner, K Smallbone, B Barker, P Mendes, LP Walker
BMC Systems Biology 6, 55, 2012
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes
K Smallbone, HL Messiha, KM Carroll, CL Winder, N Malys, WB Dunn, ...
FEBS letters 587 (17), 2832-2841, 2013
Systematic construction of kinetic models from genome-scale metabolic networks
NJ Stanford, T Lubitz, K Smallbone, E Klipp, P Mendes, W Liebermeister
PloS one 8 (11), e79195, 2013
Further developments towards a genome-scale metabolic model of yeast
K Smallbone, P Dobson, D Jameson, E Simeonidis, K Lanthaler, P Pir, ...
BMC Systems Biology 4, 145, 2010
The SuBliMinaL toolbox: automating steps in the reconstruction of metabolic networks
N Swainston, K Smallbone, P Mendes, D Kell, N Paton
Journal of Integrative Bioinformatics 8 (2), 186, 2011
Something from nothing − bridging the gap between constraint‐based and kinetic modelling
K Smallbone, E Simeonidis, DS Broomhead, DB Kell
FEBS Journal 274 (21), 5576-5585, 2007
Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance
BD Heavner, K Smallbone, ND Price, LP Walker
Database 2013, bat059, 2013
Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli
P Millard, K Smallbone, P Mendes
PLoS computational biology 13 (2), e1005396, 2017
Flux balance analysis: A geometric perspective
K Smallbone, E Simeonidis
Journal of theoretical biology 258 (2), 311-315, 2009
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology
AF Villaverde, D Henriques, K Smallbone, S Bongard, J Schmid, ...
BMC systems biology 9, 1-15, 2015
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