|A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.|
RDM Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X
|The genetic architecture of type 2 diabetes|
C Fuchsberger, J Flannick, TM Teslovich, A Mahajan, V Agarwala, ...
Nature 536 (7614), 41-47, 2016
|Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift|
DM Ruden, P Cingolani, VM Patel, M Coon, T Nguyen, SJ Land, X Lu
Frontiers in genetics 3, 35, 2012
|jFuzzyLogic: a robust and flexible Fuzzy-Logic inference system language implementation|
P Cingolani, J Alcala-Fdez
2012 IEEE International Conference on Fuzzy Systems, 1-8, 2012
|jFuzzyLogic: a java library to design fuzzy logic controllers according to the standard for fuzzy control programming|
P Cingolani, J Alcalá-Fdez
International Journal of Computational Intelligence Systems 6 (sup1), 61-75, 2013
|Rare variants in PPARG with decreased activity in adipocyte differentiation are associated with increased risk of type 2 diabetes|
AR Majithia, J Flannick, P Shahinian, M Guo, MA Bray, P Fontanillas, ...
Proceedings of the National Academy of Sciences 111 (36), 13127-13132, 2014
|Epigenetics of early-life lead exposure and effects on brain development|
MC Senut, P Cingolani, A Sen, A Kruger, A Shaik, H Hirsch, ST Suhr, ...
Epigenomics 4 (6), 665-674, 2012
|Lead exposure disrupts global DNA methylation in human embryonic stem cells and alters their neuronal differentiation|
MC Senut, A Sen, P Cingolani, A Shaik, SJ Land, DM Ruden
Toxicological Sciences 139 (1), 142-161, 2014
|Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus|
A Mahajan, X Sim, HJ Ng, A Manning, MA Rivas, HM Highland, AE Locke, ...
PLoS Genet 11 (1), e1004876, 2015
|Adjusted sequence kernel association test for rare variants controlling for cryptic and family relatedness|
K Oualkacha, Z Dastani, R Li, PE Cingolani, TD Spector, CJ Hammond, ...
Genetic epidemiology 37 (4), 366-376, 2013
|A program for annotating and predicting the effects of single nucleotide polymorphisms|
P Cingolani, A Platts, LL Wang, M Coon, T Nguyen, L Wang, SJ Land, ...
SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118, 80-92, 0
|Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees|
P Cingolani, X Cao, RS Khetani, CC Chen, M Coon, A Bollig-Fischer, ...
BMC genomics 14 (1), 666, 2013
|Lead exposure induces changes in 5-hydroxymethylcytosine clusters in CpG islands in human embryonic stem cells and umbilical cord blood|
A Sen, P Cingolani, MC Senut, S Land, A Mercado-Garcia, ...
Epigenetics 10 (7), 607-621, 2015
|A low-frequency inactivating AKT2 variant enriched in the Finnish population is associated with fasting insulin levels and type 2 diabetes risk|
A Manning, HM Highland, J Gasser, X Sim, T Tukiainen, P Fontanillas, ...
Diabetes 66 (7), 2019-2032, 2017
|BigDataScript: a scripting language for data pipelines|
P Cingolani, R Sladek, M Blanchette
Bioinformatics 31 (1), 10-16, 2015
|An N-ethyl-N-nitrosourea (ENU)-induced dominant negative mutation in the JAK3 kinase protects against cerebral malaria|
SE Bongfen, IG Rodrigue-Gervais, J Berghout, S Torre, P Cingolani, ...
PloS one 7 (2), e31012, 2012
|Evaluating the contribution of rare variants to type 2 diabetes and related traits using pedigrees|
G Jun, A Manning, M Almeida, M Zawistowski, AR Wood, TM Teslovich, ...
Proceedings of the National Academy of Sciences 115 (2), 379-384, 2018
|snpEff: Variant effect prediction|
|Sequence data and association statistics from 12,940 type 2 diabetes cases and controls|
J Flannick, C Fuchsberger, A Mahajan, TM Teslovich, V Agarwala, ...
Scientific data 4, 170179, 2017
|Genome-wide mouse mutagenesis reveals CD45-mediated T cell function as critical in protective immunity to HSV-1|
G Caignard, GA Leiva-Torres, M Leney-Greene, B Charbonneau, ...
PLoS Pathog 9 (9), e1003637, 2013