| RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design JA Garcia-Martin, P Clote, I Dotu Journal of bioinformatics and computational biology 11 (02), 1350001, 2013 | 114 | 2013 |
| From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics S Manrubia, JA Cuesta, J Aguirre, SE Ahnert, L Altenberg, AV Cano, ... Physics of Life Reviews 38, 55-106, 2021 | 88 | 2021 |
| Genome-Wide Analysis of Protein Disorder in Arabidopsis thaliana: Implications for Plant Environmental Adaptation N Pietrosemoli, JA Garcia-Martin, R Solano, F Pazos PloS one 8 (2), e55524, 2013 | 75 | 2013 |
| Protein intrinsic disorder in plants F Pazos, N Pietrosemoli, JA García-Martín, R Solano Frontiers in plant science 4, 363, 2013 | 72 | 2013 |
| Complete RNA inverse folding: computational design of functional hammerhead ribozymes I Dotu, JA Garcia-Martin, BL Slinger, V Mechery, MM Meyer, P Clote Nucleic acids research 42 (18), 11752-11762, 2014 | 45 | 2014 |
| RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules JA Garcia-Martin, I Dotu, P Clote Nucleic Acids Research 43 (W1), W513-W521, 2015 | 42 | 2015 |
| Practical analysis of specificity-determining residues in protein families M Chagoyen, JA García-Martín, F Pazos Briefings in bioinformatics 17 (2), 255-261, 2016 | 41 | 2016 |
| RNAiFold: a web server for RNA inverse folding and molecular design JA Garcia-Martin, P Clote, I Dotu Nucleic acids research 41 (W1), W465-W470, 2013 | 33 | 2013 |
| JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures T Muth, JA García-Martín, A Rausell, D Juan, A Valencia, F Pazos Bioinformatics 28 (4), 584-586, 2012 | 33 | 2012 |
| MoiRNAiFold: a novel tool for complex in silico RNA design G Minuesa, C Alsina, JA Garcia-Martin, JC Oliveros, I Dotu Nucleic acids research 49 (9), 4934-4943, 2021 | 27 | 2021 |
| WeReview: CRISPR tools—Live repository of computational tools for assisting CRISPR/Cas experiments R Torres-Perez, JA Garcia-Martin, L Montoliu, JC Oliveros, F Pazos Bioengineering 6 (3), 63, 2019 | 27 | 2019 |
| RNA thermodynamic structural entropy JA Garcia-Martin, P Clote PloS one 10 (11), e0137859, 2015 | 27 | 2015 |
| Statistical theory of phenotype abundance distributions: A test through exact enumeration of genotype spaces JA García-Martín, P Catalán, S Manrubia, JA Cuesta EPL (Europhysics Letters) 123 (2), 28001, 2018 | 22 | 2018 |
| In vitro selection of high affinity DNA and RNA aptamers that detect hepatitis C virus core protein of genotypes 1 to 4 and inhibit virus production in cell culture B Torres-Vázquez, AM de Lucas, C García-Crespo, JA García-Martín, ... Journal of Molecular Biology 434 (7), 167501, 2022 | 21 | 2022 |
| RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory JA Garcia-Martin, AH Bayegan, I Dotu, P Clote BMC bioinformatics 17, 1-24, 2016 | 15 | 2016 |
| Gemin5-dependent RNA association with polysomes enables selective translation of ribosomal and histone mRNAs A Embarc-Buh, R Francisco-Velilla, JA Garcia-Martin, S Abellan, ... Cellular and Molecular Life Sciences 79 (9), 490, 2022 | 14 | 2022 |
| RNAiFold2T: constraint programming design of thermo-IRES switches JA Garcia-Martin, I Dotu, J Fernandez-Chamorro, G Lozano, J Ramajo, ... Bioinformatics 32 (12), i360-i368, 2016 | 12 | 2016 |
| Designing synthetic RNAs to determine the relevance of structural motifs in picornavirus IRES elements J Fernandez-Chamorro, G Lozano, JA Garcia-Martin, J Ramajo, I Dotu, ... Scientific reports 6 (1), 24243, 2016 | 11 | 2016 |
| Concomitant prediction of environmental fate and toxicity of chemical compounds JA Garcia-Martin, M Chavarría, V de Lorenzo, F Pazos Biology Methods and Protocols 5 (1), bpaa025, 2020 | 9 | 2020 |
| Entropic contribution to phenotype fitness P Catalán, JA García-Martín, J Aguirre, JA Cuesta, S Manrubia Journal of Physics A: Mathematical and Theoretical 56 (34), 345601, 2023 | 3 | 2023 |
Peter CloteBoston CollgeVerified email at bc.edu
