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Juan Antonio García Martín
Juan Antonio García Martín
Bioinformatics for Genomics and Proteomics Unit, CNB-CSIC
Verified email at cnb.csic.es
Title
Cited by
Cited by
Year
RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design
JA Garcia-Martin, P Clote, I Dotu
Journal of bioinformatics and computational biology 11 (02), 1350001, 2013
952013
Genome-Wide Analysis of Protein Disorder in Arabidopsis thaliana: Implications for Plant Environmental Adaptation
N Pietrosemoli, JA Garcia-Martin, R Solano, F Pazos
PloS one 8 (2), e55524, 2013
682013
Protein intrinsic disorder in plants
F Pazos, N Pietrosemoli, JA García-Martín, R Solano
Frontiers in plant science 4, 60888, 2013
672013
From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics
S Manrubia, JA Cuesta, J Aguirre, SE Ahnert, L Altenberg, AV Cano, ...
Physics of Life Reviews 38, 55-106, 2021
602021
Complete RNA inverse folding: computational design of functional hammerhead ribozymes
I Dotu, JA Garcia-Martin, BL Slinger, V Mechery, MM Meyer, P Clote
Nucleic acids research 42 (18), 11752-11762, 2014
412014
RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules
JA Garcia-Martin, I Dotu, P Clote
Nucleic Acids Research 43 (W1), W513-W521, 2015
362015
Practical analysis of specificity-determining residues in protein families
M Chagoyen, JA García-Martín, F Pazos
Briefings in bioinformatics 17 (2), 255-261, 2016
342016
RNAiFold: a web server for RNA inverse folding and molecular design
JA Garcia-Martin, P Clote, I Dotu
Nucleic acids research 41 (W1), W465-W470, 2013
272013
JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures
T Muth, JA García-Martín, A Rausell, D Juan, A Valencia, F Pazos
Bioinformatics 28 (4), 584-586, 2012
272012
WeReview: CRISPR tools—Live repository of computational tools for assisting CRISPR/Cas experiments
R Torres-Perez, JA Garcia-Martin, L Montoliu, JC Oliveros, F Pazos
Bioengineering 6 (3), 63, 2019
252019
RNA thermodynamic structural entropy
JA Garcia-Martin, P Clote
PloS one 10 (11), e0137859, 2015
232015
Statistical theory of phenotype abundance distributions: A test through exact enumeration of genotype spaces
JA García-Martín, P Catalán, S Manrubia, JA Cuesta
EPL (Europhysics Letters) 123 (2), 28001, 2018
202018
MoiRNAiFold: a novel tool for complex in silico RNA design
G Minuesa, C Alsina, JA Garcia-Martin, JC Oliveros, I Dotu
Nucleic acids research 49 (9), 4934-4943, 2021
152021
RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory
JA Garcia-Martin, AH Bayegan, I Dotu, P Clote
BMC bioinformatics 17, 1-24, 2016
152016
In vitro selection of high affinity DNA and RNA aptamers that detect hepatitis C virus core protein of genotypes 1 to 4 and inhibit virus production in cell culture
B Torres-Vázquez, AM de Lucas, C García-Crespo, JA García-Martín, ...
Journal of Molecular Biology 434 (7), 167501, 2022
142022
RNAiFold2T: constraint programming design of thermo-IRES switches
JA Garcia-Martin, I Dotu, J Fernandez-Chamorro, G Lozano, J Ramajo, ...
Bioinformatics 32 (12), i360-i368, 2016
112016
Designing synthetic RNAs to determine the relevance of structural motifs in picornavirus IRES elements
J Fernandez-Chamorro, G Lozano, JA Garcia-Martin, J Ramajo, I Dotu, ...
Scientific Reports 6 (1), 24243, 2016
92016
Gemin5-dependent RNA association with polysomes enables selective translation of ribosomal and histone mRNAs
A Embarc-Buh, R Francisco-Velilla, JA Garcia-Martin, S Abellan, ...
Cellular and Molecular Life Sciences 79 (9), 490, 2022
42022
Concomitant prediction of environmental fate and toxicity of chemical compounds
JA Garcia-Martin, M Chavarría, V de Lorenzo, F Pazos
Biology Methods and Protocols 5 (1), bpaa025, 2020
42020
New tools to analyze overlapping coding regions
AH Bayegan, JA Garcia-Martin, P Clote
BMC bioinformatics 17, 1-15, 2016
22016
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Articles 1–20