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Daniel Merkle
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Ant colony optimization for resource-constrained project scheduling
D Merkle, M Middendorf, H Schmeck
IEEE transactions on evolutionary computation 6 (4), 333-346, 2002
11772002
Swarm intelligence: introduction and applications
C Blum, D Merkle
Springer Science & Business Media, 2008
4862008
Bi-criterion optimization with multi colony ant algorithms
S Iredi, D Merkle, M Middendorf
Evolutionary Multi-Criterion Optimization: First International Conference …, 2001
3592001
CREx: inferring genomic rearrangements based on common intervals
M Bernt, D Merkle, K Ramsch, G Fritzsch, M Perseke, D Bernhard, ...
Bioinformatics 23 (21), 2957-2958, 2007
3142007
An ant algorithm with a new pheromone evaluation rule for total tardiness problems
D Merkle, M Middendorf
Real-World Applications of Evolutionary Computing: EvoWorkshops 2000 …, 2000
2012000
Molecular docking with multi-objective particle swarm optimization
S Janson, D Merkle, M Middendorf
Applied Soft Computing 8 (1), 666-675, 2008
1482008
A parameter-adaptive dynamic programming approach for inferring cophylogenies
D Merkle, M Middendorf, N Wieseke
BMC bioinformatics 11, 1-10, 2010
1332010
Modeling the dynamics of ant colony optimization
D Merkle, M Middendorf
Evolutionary Computation 10 (3), 235-262, 2002
1302002
Ant colony optimization with global pheromone evaluation for scheduling a single machine
D Merkle, M Middendorf
Applied Intelligence 18, 105-111, 2003
1232003
Swarm intelligence
D Merkle, M Middendorf
Search methodologies: introductory tutorials in optimization and decision …, 2013
1222013
Evolution of mitochondrial gene orders in echinoderms
M Perseke, G Fritzsch, K Ramsch, M Bernt, D Merkle, M Middendorf, ...
Molecular Phylogenetics and Evolution 47 (2), 855-864, 2008
972008
Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information
D Merkle, M Middendorf
Theory in Biosciences 123, 277-299, 2005
972005
A software package for chemically inspired graph transformation
JL Andersen, C Flamm, D Merkle, PF Stadler
Graph Transformation: 9th International Conference, ICGT 2016, in Memory of …, 2016
722016
An algorithm for inferring mitogenome rearrangements in a phylogenetic tree
M Bernt, D Merkle, M Middendorf
Comparative Genomics: International Workshop, RECOMB-CG 2008, Paris, France …, 2008
652008
Fast ant colony optimization on runtime reconfigurable processor arrays
D Merkle, M Middendorf
Genetic Programming and Evolvable Machines 3, 345-361, 2002
572002
Dynamic polyethism and competition for tasks in threshold reinforcement models of social insects
D Merkle, M Middendorf
Adaptive Behavior 12 (3-4), 251-262, 2004
542004
Inferring chemical reaction patterns using rule composition in graph grammars
JL Andersen, C Flamm, D Merkle, PF Stadler
Journal of Systems Chemistry 4, 1-14, 2013
522013
A new multi-objective particle swarm optimization algorithm using clustering applied to automated docking
S Janson, D Merkle
International Workshop on Hybrid Metaheuristics, 128-141, 2005
522005
Chemical transformation motifs—Modelling pathways as integer hyperflows
JL Andersen, C Flamm, D Merkle, PF Stadler
IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017
502017
Navigating the chemical space of HCN polymerization and hydrolysis: guiding graph grammars by mass spectrometry data
JL Andersen, T Andersen, C Flamm, MM Hanczyc, D Merkle, PF Stadler
Entropy 15 (10), 4066-4083, 2013
472013
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