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Jon Agirre
Jon Agirre
Royal Society University Research Fellow at York Structural Biology Laboratory, University of York
Verified email at york.ac.uk - Homepage
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Cited by
Year
CCP4i2: the new graphical user interface to the CCP4 program suite
L Potterton, J Agirre, C Ballard, K Cowtan, E Dodson, PR Evans, ...
Acta Crystallographica Section D: Structural Biology 74 (2), 68-84, 2018
4292018
Carbohydrate–aromatic interactions in proteins
KL Hudson, GJ Bartlett, RC Diehl, J Agirre, T Gallagher, LL Kiessling, ...
Journal of the American Chemical Society 137 (48), 15152-15160, 2015
3662015
Privateer: software for the conformational validation of carbohydrate structures
J Agirre, J Iglesias-Fernández, C Rovira, GJ Davies, KS Wilson, ...
Nature structural & molecular biology 22 (11), 833-834, 2015
3282015
Probing the biophysical interplay between a viral genome and its capsid
J Snijder, C Uetrecht, RJ Rose, R Sanchez-Eugenia, GA Marti, J Agirre, ...
Nature chemistry 5 (6), 502-509, 2013
1392013
The CCP4 suite: integrative software for macromolecular crystallography
J Agirre, M Atanasova, H Bagdonas, CB Ballard, A Baslé, ...
Acta Crystallographica Section D: Structural Biology 79 (6), 449-461, 2023
1232023
The ever changing moods of calmodulin: how structural plasticity entails transductional adaptability
A Villarroel, M Taglialatela, G Bernardo-Seisdedos, A Alaimo, J Agirre, ...
Journal of molecular biology 426 (15), 2717-2735, 2014
1022014
Carbohydrate anomalies in the PDB
J Agirre, G Davies, K Wilson, K Cowtan
Nature chemical biology 11 (5), 303-303, 2015
862015
The case for post-predictional modifications in the AlphaFold Protein Structure Database
H Bagdonas, CA Fogarty, E Fadda, J Agirre
Nature structural & molecular biology 28 (11), 869-870, 2021
662021
Structure of the Triatoma virus capsid
G Squires, J Pous, J Agirre, GS Rozas-Dennis, MD Costabel, GA Marti, ...
Acta Crystallographica Section D: Biological Crystallography 69 (6), 1026-1037, 2013
512013
Capsid protein identification and analysis of mature Triatoma virus (TrV) virions and naturally occurring empty particles
J Agirre, K Aloria, JM Arizmendi, I Iloro, F Elortza, R Sánchez-Eugenia, ...
Virology 409 (1), 91-101, 2011
502011
Strategies for carbohydrate model building, refinement and validation
J Agirre
Acta Crystallographica Section D: Structural Biology 73 (2), 171-186, 2017
462017
The molecular basis of endolytic activity of a multidomain alginate lyase from Defluviitalea phaphyphila, a representative of a new lyase family, PL39
S Ji, SR Dix, AA Aziz, SE Sedelnikova, PJ Baker, JB Rafferty, PA Bullough, ...
Journal of Biological Chemistry 294 (48), 18077-18091, 2019
432019
Three-dimensional structures of two heavily N-glycosylated Aspergillus sp. family GH3 β-d-glucosidases
J Agirre, A Ariza, WA Offen, JP Turkenburg, SM Roberts, S McNicholas, ...
Acta Crystallographica Section D: Structural Biology 72 (2), 254-265, 2016
432016
Carbohydrate structure: the rocky road to automation
J Agirre, GJ Davies, KS Wilson, KD Cowtan
Current Opinion in Structural Biology 44, 39-47, 2017
362017
Cryo-electron microscopy reconstructions of triatoma virus particles: a clue to unravel genome delivery and capsid disassembly
J Agirre, G Goret, M LeGoff, R Sanchez-Eugenia, GA Marti, J Navaza, ...
Journal of General Virology 94 (5), 1058-1068, 2013
302013
Glycoblocks: a schematic three-dimensional representation for glycans and their interactions
S McNicholas, J Agirre
Acta Crystallographica Section D: Structural Biology 73 (2), 187-194, 2017
262017
Structural basis of glycogen biosynthesis regulation in bacteria
JO Cifuente, N Comino, J Madariaga-Marcos, S López-Fernández, ...
Structure 24 (9), 1613-1622, 2016
262016
Interdomain Ca2+ effects in Escherichia coli α-haemolysin: Ca2+ binding to the C-terminal domain stabilizes both C-and N-terminal domains
L Sánchez-Magraner, AL Cortajarena, M García-Pacios, JLR Arrondo, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1798 (6), 1225-1233, 2010
222010
Leveraging glycomics data in glycoprotein 3D structure validation with Privateer
H Bagdonas, D Ungar, J Agirre
Beilstein Journal of Organic Chemistry 16 (1), 2523-2533, 2020
212020
Structural glycobiology in the age of electron cryo-microscopy
M Atanasova, H Bagdonas, J Agirre
Current Opinion in Structural Biology 62, 70-78, 2020
212020
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