| GGIR: a research community–driven open source R package for generating physical activity and sleep outcomes from multi-day raw accelerometer data JH Migueles, AV Rowlands, F Huber, S Sabia, VT van Hees Journal for the Measurement of Physical Behaviour 2 (3), 188-196, 2019 | 704 | 2019 |
| Cytoskeletal crosstalk: when three different personalities team up F Huber, A Boire, MP López, GH Koenderink Current opinion in cell biology 32, 39-47, 2015 | 307 | 2015 |
| Emergent complexity of the cytoskeleton: from single filaments to tissue F Huber, J Schnauß, S Rönicke, P Rauch, K Müller, C Fütterer, J Käs Advances in physics 62 (1), 1-112, 2013 | 292 | 2013 |
| DOME: recommendations for supervised machine learning validation in biology I Walsh, D Fishman, D Garcia-Gasulla, T Titma, G Pollastri, J Harrow, ... Nature methods 18 (10), 1122-1127, 2021 | 189 | 2021 |
| Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships F Huber, L Ridder, S Verhoeven, JH Spaaks, F Diblen, S Rogers, ... PLoS computational biology 17 (2), e1008724, 2021 | 178 | 2021 |
| Artificial intelligence for natural product drug discovery MW Mullowney, KR Duncan, SS Elsayed, N Garg, JJJ van der Hooft, ... Nature Reviews Drug Discovery 22 (11), 895-916, 2023 | 159 | 2023 |
| Actin–microtubule coordination at growing microtubule ends MP López, F Huber, I Grigoriev, MO Steinmetz, A Akhmanova, ... Nature communications 5 (1), 4778, 2014 | 156 | 2014 |
| Advances in decomposing complex metabolite mixtures using substructure-and network-based computational metabolomics approaches MA Beniddir, KB Kang, G Genta-Jouve, F Huber, S Rogers, ... Natural product reports 38 (11), 1967-1993, 2021 | 124 | 2021 |
| A community resource for paired genomic and metabolomic data mining MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, ... Nature Chemical Biology 17 (4), 363-368, 2021 | 123 | 2021 |
| MS2DeepScore: a novel deep learning similarity measure to compare tandem mass spectra F Huber, S van der Burg, JJJ van der Hooft, L Ridder Journal of cheminformatics 13 (1), 84, 2021 | 114 | 2021 |
| matchms - processing and similarity evaluation of mass spectrometry data F Huber, S Verhoeven, C Meijer, H Spreeuw, EMV Castilla, C Geng, ... Journal of Open Source Software 5 (52), 2020 | 68 | 2020 |
| Good practices and recommendations for using and benchmarking computational metabolomics metabolite annotation tools NF de Jonge, K Mildau, D Meijer, JJR Louwen, C Bueschl, F Huber, ... Metabolomics 18 (12), 103, 2022 | 63 | 2022 |
| Formation of regularly spaced networks as a general feature of actin bundle condensation by entropic forces F Huber, D Strehle, J Schnauß, J Käs New Journal of Physics 17 (4), 043029, 2015 | 63 | 2015 |
| Growing actin networks form lamellipodium and lamellum by self-assembly F Huber, J Käs, B Stuhrmann Biophysical journal 95 (12), 5508-5523, 2008 | 63 | 2008 |
| MS2Query: reliable and scalable MS2 mass spectra-based analogue search NF de Jonge, JJR Louwen, E Chekmeneva, S Camuzeaux, FJ Vermeir, ... Nature Communications 14 (1), 1752, 2023 | 52 | 2023 |
| Mcfly: Automated deep learning on time series D Van Kuppevelt, C Meijer, F Huber, A Van Der Ploeg, S Georgievska, ... SoftwareX 12, 100548, 2020 | 52 | 2020 |
| Counterion-induced formation of regular actin bundle networks F Huber, D Strehle, J Käs Soft Matter 8 (4), 931-936, 2012 | 49 | 2012 |
| Comparison of cosine, modified cosine, and neutral loss based spectrum alignment for discovery of structurally related molecules W Bittremieux, R Schmid, F Huber, JJJ van der Hooft, M Wang, ... Journal of the American Society for Mass Spectrometry 33 (9), 1733-1744, 2022 | 46 | 2022 |
| In vitro reconstitution of dynamic microtubules interacting with actin filament networks MP López, F Huber, I Grigoriev, MO Steinmetz, A Akhmanova, ... Methods in enzymology 540, 301-320, 2014 | 37 | 2014 |
| Computing on actin bundles network A Adamatzky, F Huber, J Schnauß Scientific reports 9 (1), 15887, 2019 | 23 | 2019 |
Justin J.J. van der HooftAssistant Professor Computational Metabolomics @ WURVerified email at wur.nl
