Gail Rosen
Gail Rosen
Professor of ECE, Drexel University
Verified email at - Homepage
Cited by
Cited by
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of The Royal Society Interface 15 (141), 20170387, 2018
Environmental and ecological factors that shape the gut bacterial communities of fish: a meta‐analysis
KE Sullam, SD Essinger, CA Lozupone, MP O’CONNOR, GL Rosen, ...
Molecular ecology 21 (13), 3363-3378, 2012
NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads
GL Rosen, ER Reichenberger, AM Rosenfeld
Bioinformatics 27 (1), 127, 2011
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ...
Genome biology 18 (1), 182, 2017
Metagenome fragment classification using N-mer frequency profiles
G Rosen, E Garbarine, D Caseiro, R Polikar, B Sokhansanj
Advances in Bioinformatics 2008, 2008
Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms
Y Lan, Q Wang, JR Cole, GL Rosen
PLoS one 7 (3), e32491, 2012
Multi-layer and recursive neural networks for metagenomic classification
G Ditzler, R Polikar, G Rosen
IEEE transactions on nanobioscience 14 (6), 608-616, 2015
Examining coding structure and redundancy in DNA
G Rosen
Engineering in Medicine and Biology Magazine, IEEE 25 (1), 62-68, 2006
Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing
D Koslicki, S Foucart, G Rosen
Bioinformatics 29 (17), 2096-2102, 2013
Combining gene prediction methods to improve metagenomic gene annotation
N Yok, G Rosen
BMC bioinformatics 12 (1), 20, 2011
Prokaryotic nucleotide composition is shaped by both phylogeny and the environment
ER Reichenberger, G Rosen, U Hershberg, R Hershberg
Genome biology and evolution 7 (5), 1380-1389, 2015
Nanopore sequencing in microgravity
ABR McIntyre, L Rizzardi, MY Angela, N Alexander, GL Rosen, DJ Botkin, ...
npj Microgravity 2 (1), 1-9, 2016
Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains
Y Lan, G Rosen, R Hershberg
Microbiome 4 (1), 1-13, 2016
Selecting age-related functional characteristics in the human gut microbiome
Y Lan, A Kriete, GL Rosen
Microbiome 1 (1), 1-12, 2013
WGSQuikr: fast whole-genome shotgun metagenomic classification
D Koslicki, S Foucart, G Rosen
PloS one 9 (3), e91784, 2014
Signal processing for biologically-inspired gradient source localization and DNA sequence analysis
GL Rosen
Georgia Institute of Technology, 2006
Signal processing for metagenomics: extracting information from the soup
GL Rosen, BA Sokhansanj, R Polikar, MA Bruns, J Russell, E Garbarine, ...
Current genomics 10 (7), 493, 2009
Validating models of bacterial chemotaxis by simulating the random motility coefficient
Z Wang, MJ Kim, G Rosen
2008 8th IEEE International Conference on BioInformatics and BioEngineering, 1-5, 2008
Exploiting the functional and taxonomic structure of genomic data by probabilistic topic modeling
X Chen, X Hu, TY Lim, X Shen, EK Park, GL Rosen
IEEE/ACM transactions on computational biology and bioinformatics 9 (4), 980-991, 2011
Fizzy: feature subset selection for metagenomics
G Ditzler, JC Morrison, Y Lan, GL Rosen
BMC bioinformatics 16 (1), 358, 2015
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