Nima Aghaeepour
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Guidelines for the use of flow cytometry and cell sorting in immunological studies
A Cossarizza, HD Chang, A Radbruch, A Acs, D Adam, S Adam‐Klages, ...
European journal of immunology 49 (10), 1457-1973, 2019
Critical assessment of automated flow cytometry data analysis techniques
N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ...
Nature methods 10 (3), 228-238, 2013
Hematopoietic stem cell subtypes expand differentially during development and display distinct lymphopoietic programs
C Benz, MR Copley, DG Kent, S Wohrer, A Cortes, N Aghaeepour, E Ma, ...
Cell stem cell 10 (3), 273-283, 2012
An immune clock of human pregnancy
N Aghaeepour, EA Ganio, D Mcilwain, AS Tsai, M Tingle, S Van Gassen, ...
Science immunology 2 (15), 2017
Rapid cell population identification in flow cytometry data
N Aghaeepour, R Nikolic, HH Hoos, RR Brinkman
Cytometry Part A 79 (1), 6-13, 2011
Standardizing flow cytometry immunophenotyping analysis from the human immunophenotyping consortium
G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ...
Scientific reports 6 (1), 1-11, 2016
Flow cytometry bioinformatics
K O'Neill, N Aghaeepour, J Špidlen, R Brinkman
PLoS computational biology 9 (12), e1003365, 2013
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays
N Aghaeepour, PK Chattopadhyay, A Ganesan, K O'neill, H Zare, A Jalali, ...
Bioinformatics 28 (7), 1009-1016, 2012
Thinking outside the gate: single-cell assessments in multiple dimensions
P Kvistborg, C Gouttefangeas, N Aghaeepour, A Cazaly, ...
Immunity 42 (4), 591, 2015
Multiomics Modeling of the Immunome, Transcriptome, Microbiome, Proteome, and Metabolome Adaptations During Human Pregnancy
MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ...
Bioinformatics, 2018
Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse
Z Good, J Sarno, A Jager, N Samusik, N Aghaeepour, EF Simonds, ...
Nature medicine 24 (4), 474-483, 2018
Patient-specific immune states before surgery are strong correlates of surgical recovery
GK Fragiadakis, B Gaudillière, EA Ganio, N Aghaeepour, M Tingle, ...
Anesthesiology 123 (6), 1241-1255, 2015
RchyOptimyx: cellular hierarchy optimization for flow cytometry
N Aghaeepour, A Jalali, K O'Neill, PK Chattopadhyay, M Roederer, ...
Cytometry Part A 81 (12), 1022-1030, 2012
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes
N Aghaeepour, P Chattopadhyay, M Chikina, T Dhaene, S Van Gassen, ...
Cytometry Part A 89 (1), 16-21, 2016
A proteomic clock of human pregnancy
N Aghaeepour, B Lehallier, Q Baca, EA Ganio, RJ Wong, MS Ghaemi, ...
American journal of obstetrics and gynecology 218 (3), 347. e1-347. e14, 2018
Commonly occurring cell subsets in high-grade serous ovarian tumors identified by single-cell mass cytometry
VD Gonzalez, N Samusik, TJ Chen, ES Savig, N Aghaeepour, DA Quigley, ...
Cell reports 22 (7), 1875-1888, 2018
Discovery and validation of biomarkers to aid the development of safe and effective pain therapeutics: challenges and opportunities
KD Davis, N Aghaeepour, AH Ahn, MS Angst, D Borsook, A Brenton, ...
Nature Reviews Neurology 16 (7), 381-400, 2020
Deletions in the cytoplasmic domain of iRhom1 and iRhom2 promote shedding of the TNF receptor by the protease ADAM17
SK Maney, DR McIlwain, R Polz, AA Pandyra, B Sundaram, D Wolff, ...
Science signaling 8 (401), ra109-ra109, 2015
Implementing mass cytometry at the bedside to study the immunological basis of human diseases: distinctive immune features in patients with a history of term or preterm birth
B Gaudillière, EA Ganio, M Tingle, HL Lancero, GK Fragiadakis, QJ Baca, ...
Cytometry Part A 87 (9), 817-829, 2015
Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma
H Zare, A Bashashati, R Kridel, N Aghaeepour, G Haffari, JM Connors, ...
American journal of clinical pathology 137 (1), 75-85, 2012
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