| SMAUG: Analyzing single-molecule tracks with nonparametric Bayesian statistics JD Karslake, ED Donarski, SA Shelby, LM Demey, VJ DiRita, SL Veatch, ... Methods 193, 16-26, 2021 | 63 | 2021 |
| BCM3D 2.0: accurate segmentation of single bacterial cells in dense biofilms using computationally generated intermediate image representations J Zhang, Y Wang, ED Donarski, TT Toma, MT Miles, ST Acton, ... npj Biofilms and Microbiomes 8 (1), 99, 2022 | 9 | 2022 |
| Independent promoter recognition by TcpP precedes cooperative promoter activation by TcpP and ToxR AL Calkins, LM Demey, JD Karslake, ED Donarski, JS Biteen, VJ DiRita MBio 12 (5), 10.1128/mbio. 02213-21, 2021 | 9 | 2021 |
| Optically accessible microfluidic flow channels for noninvasive high-resolution biofilm imaging using lattice light sheet microscopy J Zhang, M Zhang, Y Wang, E Donarski, A Gahlmann The Journal of Physical Chemistry B 125 (44), 12187-12196, 2021 | 7 | 2021 |
| Long-term high-resolution lattice light sheet imaging of bacterial communities in physiologically relevant conditions ED Donarski, Y Wang, J Zhang, J Wang, ST Acton, A Gahlmann Biophysical Journal 121 (3), 449a, 2022 | | 2022 |
| Optically accessible microfluidic flow channels for non-invasive high-resolution biofilm imaging using lattice light sheet microscopy JI Zhang, M Zhang, Y Wang, ED Donarski, A Gahlmann Biophysical Journal 121 (3), 138a, 2022 | | 2022 |
| Accurate segmentation and tracking of single cells in complex 4D bacterial biofilms using machine learning Y Wang, J Zhang, ED Donarski, A Gahlmann Biophysical Journal 121 (3), 32a, 2022 | | 2022 |
| Investigating the Dynamics in Vibrio cholerae Pathogenicity by Single-Molecule Palm and Bayesian Statistics ED Donarski, JD Karslake, L Demey, VJ DiRita, J Biteen Biophysical Journal 118 (3), 54a, 2020 | | 2020 |
