Josh Vermaas
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Mechanism of lignin inhibition of enzymatic biomass deconstruction
JV Vermaas, L Petridis, X Qi, R Schulz, B Lindner, JC Smith
Biotechnology for biofuels 8 (1), 217, 2015
Effects of lytic polysaccharide monooxygenase oxidation on cellulose structure and binding of oxidized cellulose oligomers to cellulases
JV Vermaas, MF Crowley, GT Beckham, CM Payne
The Journal of Physical Chemistry B 119 (20), 6129-6143, 2015
CHARMM-GUI HMMM builder for membrane simulations with the highly mobile membrane-mimetic model
Y Qi, X Cheng, J Lee, JV Vermaas, TV Pogorelov, E Tajkhorshid, S Park, ...
Biophysical journal 109 (10), 2012-2022, 2015
Partitioning of amino acids into a model membrane: capturing the interface
TV Pogorelov, JV Vermaas, MJ Arcario, E Tajkhorshid
The Journal of Physical Chemistry B 118 (6), 1481-1492, 2014
Conformational heterogeneity of α-synuclein in membrane
JV Vermaas, E Tajkhorshid
Biochimica et Biophysica Acta (BBA)-Biomembranes 1838 (12), 3107-3117, 2014
Differential membrane binding mechanics of synaptotagmin isoforms observed in atomic detail
JV Vermaas, E Tajkhorshid
Biochemistry 56 (1), 281-293, 2017
Atomic-level description of protein–lipid interactions using an accelerated membrane model
JL Baylon, JV Vermaas, MP Muller, MJ Arcario, TV Pogorelov, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (7), 1573-1583, 2016
A microscopic view of phospholipid insertion into biological membranes
JV Vermaas, E Tajkhorshid
The Journal of Physical Chemistry B 118 (7), 1754-1764, 2014
Efficient exploration of membrane-associated phenomena at atomic resolution
JV Vermaas, JL Baylon, MJ Arcario, MP Muller, Z Wu, TV Pogorelov, ...
The Journal of membrane biology 248 (3), 563-582, 2015
TopoGromacs: Automated topology conversion from CHARMM to GROMACS within VMD
JV Vermaas, DJ Hardy, JE Stone, E Tajkhorshid, A Kohlmeyer
Journal of chemical information and modeling 56 (6), 1112-1116, 2016
The cellular membrane as a mediator for small molecule interaction with membrane proteins
CG Mayne, MJ Arcario, P Mahinthichaichan, JL Baylon, JV Vermaas, ...
Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (10), 2290-2304, 2016
Beyond the Boltzmann factor for corrections to scaling in ferromagnetic materials and critical fluids
RV Chamberlin, JV Vermaas, GH Wolf
The European Physical Journal B 71 (1), 1, 2009
Membrane permeability of fatty acyl compounds studied via molecular simulation
JV Vermaas, GT Beckham, MF Crowley
The Journal of Physical Chemistry B 121 (50), 11311-11324, 2017
Automated transformation of lignin topologies into atomic structures with LigninBuilder
JV Vermaas, LD Dellon, LJ Broadbelt, GT Beckham, MF Crowley
ACS Sustainable Chemistry & Engineering 7 (3), 3443-3453, 2018
Systematic parameterization of lignin for the CHARMM force field
JV Vermaas, L Petridis, J Ralph, MF Crowley, GT Beckham
Green chemistry 21 (1), 109-122, 2019
Redox Potential Tuning through Differential Quinone Binding in the Photosynthetic Reaction Center of Rhodobacter sphaeroides
JV Vermaas, AT Taguchi, SA Dikanov, CA Wraight, E Tajkhorshid
Biochemistry 54 (12), 2104-2116, 2015
Lignin-KMC: A Toolkit for Simulating Lignin Biosynthesis
MJ Orella, TZH Gani, JV Vermaas, ML Stone, EM Anderson, GT Beckham, ...
ACS Sustainable Chemistry & Engineering 7 (22), 18313-18322, 2019
Membrane permeability of terpenoids explored with molecular simulation
JV Vermaas, GJ Bentley, GT Beckham, MF Crowley
The Journal of Physical Chemistry B 122 (45), 10349-10361, 2018
Topotools 2017
A Kohlmeyer
DOI: http://dx. doi. org/10.5281/zenodo 598373, 0
Passive membrane transport of lignin-related compounds
JV Vermaas, RA Dixon, F Chen, SD Mansfield, W Boerjan, J Ralph, ...
Proceedings of the National Academy of Sciences 116 (46), 23117-23123, 2019
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