Nives Skunca
Nives Skunca
Postdoctoral Fellow, ETH Zürich
Verified email at inf.ethz.ch - Homepage
TitleCited byYear
REVIGO summarizes and visualizes long lists of gene ontology terms
F Supek, M Bošnjak, N Škunca, T Šmuc
PloS one 6 (7), 2011
25292011
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
6552013
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 184, 2016
2112016
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ...
Nucleic acids research 43 (D1), D240-D249, 2015
1832015
The what, where, how and why of gene ontology—a primer for bioinformaticians
L Du Plessis, N Škunca, C Dessimoz
Briefings in bioinformatics 12 (6), 723-735, 2011
1482011
Inferring horizontal gene transfer
M Ravenhall, N Škunca, F Lassalle, C Dessimoz
PLoS computational biology 11 (5), 2015
1302015
Quality of computationally inferred gene ontology annotations
N Škunca, A Altenhoff, C Dessimoz
PLoS computational biology 8 (5), 2012
1032012
A transcriptomic-phylogenomic analysis of the evolutionary relationships of flatworms
B Egger, F Lapraz, B Tomiczek, S Müller, C Dessimoz, J Girstmair, ...
Current Biology 25 (10), 1347-1353, 2015
1022015
Translational selection is ubiquitous in prokaryotes
F Supek, N Škunca, J Repar, K Vlahoviček, T Šmuc
PLoS genetics 6 (6), 2010
732010
The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease
X Peng, J Alföldi, K Gori, AJ Eisfeld, SR Tyler, J Tisoncik-Go, D Brawand, ...
Nature biotechnology 32 (12), 1250-1255, 2014
692014
Tests results strength and thermophysical properties of aerated concrete block wall samples with the use of polyurethane adhesive
GI Grinfeld, AS Gorshkov, NI Vatin
Advanced Materials Research 941, 786-799, 2014
572014
Whole exome sequencing of rare aggressive breast cancer histologies
MV Dieci, V Smutná, V Scott, G Yin, R Xu, P Vielh, MC Mathieu, C Vicier, ...
Breast cancer research and treatment 156 (1), 21-32, 2016
40*2016
Primer on the gene ontology
P Gaudet, N Škunca, JC Hu, C Dessimoz
The Gene Ontology Handbook, 25-37, 2017
392017
CAFA and the open world of protein function predictions
C Dessimoz, N Škunca, PD Thomas
Trends in Genetics 29 (11), 609-610, 2013
382013
Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships
N Škunca, M Bošnjak, A Kriško, P Panov, S Džeroski, T Šmuc, F Supek
PLoS computational biology 9 (1), 2013
362013
Polyketide synthase genes and the natural products potential of Dictyostelium discoideum
J Zucko, N Skunca, T Curk, B Zupan, PF Long, J Cullum, RH Kessin, ...
Bioinformatics 23 (19), 2543-2549, 2007
332007
The Gene Ontology Handbook
C Dessimoz, N Škunca
Humana Press 1446, 15-24, 2017
302017
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations
FB Bastian, MC Chibucos, P Gaudet, M Giglio, GL Holliday, H Huang, ...
Database 2015, 2015
292015
Phylogenetic profiling: how much input data is enough?
N Škunca, C Dessimoz
PloS one 10 (2), 2015
202015
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
172016
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Articles 1–20