| 2016 update of the PRIDE database and its related tools JA Vizcaíno, A Csordas, N Del-Toro, JA Dianes, J Griss, I Lavidas, ... Nucleic acids research 44 (D1), D447-D456, 2016 | 2958 | 2016 |
| The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013 JA Vizcaíno, RG Côté, A Csordas, JA Dianes, A Fabregat, JM Foster, ... Nucleic acids research 41 (D1), D1063-D1069, 2012 | 1694 | 2012 |
| The PRIDE database and related tools and resources in 2019: improving support for quantification data Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ... Nucleic acids research 47 (D1), D442-D450, 2019 | 1687 | 2019 |
| The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ... Nucleic acids research, gkw936, 2016 | 456 | 2016 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 298 | 2018 |
| A multicenter study benchmarks software tools for label-free proteome quantification P Navarro, J Kuharev, LC Gillet, OM Bernhardt, B MacLean, HL Röst, ... Nature biotechnology 34 (11), 1130-1136, 2016 | 155 | 2016 |
| Making proteomics data accessible and reusable: current state of proteomics databases and repositories Y Perez‐Riverol, E Alpi, R Wang, H Hermjakob, JA Vizcaíno Proteomics 15 (5-6), 930-950, 2015 | 134 | 2015 |
| PRIDE Inspector: a tool to visualize and validate MS proteomics data R Wang, A Fabregat, D Ríos, D Ovelleiro, JM Foster, RG Côté, J Griss, ... Nature biotechnology 30 (2), 135-137, 2012 | 123 | 2012 |
| The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ... Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012 | 109* | 2012 |
| BioContainers: An open-source and community-driven framework for software standardization FV Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ... Bioinformatics, 2017 | 107 | 2017 |
| The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience J Griss, AR Jones, T Sachsenberg, M Walzer, L Gatto, J Hartler, ... Molecular & Cellular Proteomics 13 (10), 2765-2775, 2014 | 98 | 2014 |
| Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets J Griss, Y Perez-Riverol, S Lewis, DL Tabb, JA Dianes, N Del-Toro, ... Nature methods 13 (8), 651-656, 2016 | 92 | 2016 |
| Discovering and linking public omics data sets using the Omics Discovery Index Y Perez-Riverol, M Bai, F da Veiga Leprevost, S Squizzato, YM Park, ... Nature biotechnology 35 (5), 406-409, 2017 | 79 | 2017 |
| Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective Y Perez-Riverol, R Wang, H Hermjakob, M Müller, V Vesada, JA Vizcaíno Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (1), 63-76, 2014 | 76 | 2014 |
| Ten simple rules for taking advantage of Git and GitHub Y Perez-Riverol, L Gatto, R Wang, T Sachsenberg, J Uszkoreit, ... PLoS computational biology 12 (7), e1004947, 2016 | 69 | 2016 |
| PRIDE inspector toolsuite: moving toward a universal visualization tool for proteomics data standard formats and quality assessment of ProteomeXchange datasets Y Perez-Riverol, QW Xu, R Wang, J Uszkoreit, J Griss, A Sanchez, ... Molecular & Cellular Proteomics 15 (1), 305-317, 2016 | 68 | 2016 |
| The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ... Nucleic acids research 48 (D1), D1145-D1152, 2020 | 55 | 2020 |
| Four simple recommendations to encourage best practices in research software RC Jiménez, M Kuzak, M Alhamdoosh, M Barker, B Batut, M Borg, ... F1000Research 6, 2017 | 52 | 2017 |
| Proteomics standards initiative: fifteen years of progress and future work EW Deutsch, S Orchard, PA Binz, W Bittremieux, M Eisenacher, ... Journal of proteome research 16 (12), 4288-4298, 2017 | 51 | 2017 |
| PIA: an intuitive protein inference engine with a web-based user interface J Uszkoreit, A Maerkens, Y Perez-Riverol, HE Meyer, K Marcus, ... Journal of proteome research 14 (7), 2988-2997, 2015 | 48 | 2015 |
Henning HermjakobHead of Molecular Systems, European Bioinformatics Institute (EMBL-EBI)Dirección de correo verificada de ebi.ac.uk
