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Jonathan A Beagan
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On the existence and functionality of topologically associating domains
JA Beagan, JE Phillips-Cremins
Nature genetics 52 (1), 8-16, 2020
2922020
YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment
JA Beagan, MT Duong, KR Titus, L Zhou, Z Cao, J Ma, CV Lachanski, ...
Genome research 27 (7), 1139-1152, 2017
2702017
Disease-associated short tandem repeats co-localize with chromatin domain boundaries
JH Sun, L Zhou, DJ Emerson, SA Phyo, KR Titus, W Gong, TG Gilgenast, ...
Cell 175 (1), 224-238. e15, 2018
1822018
Glucocerebrosidase gene therapy prevents α-synucleinopathy of midbrain dopamine neurons
EM Rocha, GA Smith, E Park, H Cao, E Brown, MA Hayes, J Beagan, ...
Neurobiology of disease 82, 495-503, 2015
1612015
Sustained systemic glucocerebrosidase inhibition induces brain α-synuclein aggregation, microglia and complement C1q activation in mice
EM Rocha, GA Smith, E Park, H Cao, AR Graham, E Brown, JR McLean, ...
Antioxidants & redox signaling 23 (6), 550-564, 2015
1412015
Local genome topology can exhibit an incompletely rewired 3D-folding state during somatic cell reprogramming
JA Beagan, TG Gilgenast, J Kim, Z Plona, HK Norton, G Hu, SC Hsu, ...
Cell stem cell 18 (5), 611-624, 2016
1232016
Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression
JA Beagan, ED Pastuzyn, LR Fernandez, MH Guo, K Feng, KR Titus, ...
Nature neuroscience 23 (6), 707-717, 2020
1212020
LADL: light-activated dynamic looping for endogenous gene expression control
JH Kim, M Rege, J Valeri, MC Dunagin, A Metzger, KR Titus, TG Gilgenast, ...
Nature methods 16 (7), 633-639, 2019
1202019
Widespread neuron-specific transgene expression in brain and spinal cord following synapsin promoter-driven AAV9 neonatal intracerebroventricular injection
JR McLean, GA Smith, EM Rocha, MA Hayes, JA Beagan, PJ Hallett, ...
Neuroscience letters 576, 73-78, 2014
982014
A Nurr1 agonist causes neuroprotection in a Parkinson’s disease lesion model primed with the toll-like receptor 3 dsRNA inflammatory stimulant poly (I: C)
GA Smith, EM Rocha, T Rooney, P Barneoud, JR McLean, J Beagan, ...
PloS one 10 (3), e0121072, 2015
822015
Cohesin-dependence of neuronal gene expression relates to chromatin loop length
L Calderon, FD Weiss, JA Beagan, MS Oliveira, R Georgieva, YF Wang, ...
Elife 11, e76539, 2022
47*2022
5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design
JH Kim, KR Titus, W Gong, JA Beagan, Z Cao, JE Phillips-Cremins
Methods 142, 39-46, 2018
202018
Neuronal Yin Yang1 in the prefrontal cortex regulates transcriptional and behavioral responses to chronic stress in mice
DY Kwon, B Xu, P Hu, YT Zhao, JA Beagan, JH Nofziger, Y Cui, ...
Nature communications 13 (1), 55, 2022
142022
Increased motor neuron resilience by small molecule compounds that regulate IGF-II expression
TM Osborn, J Beagan, O Isacson
Neurobiology of Disease 110, 218-230, 2018
132018
ALS-associated peripherin spliced transcripts form distinct protein inclusions that are neuroprotective against oxidative stress
JR McLean, GA Smith, EM Rocha, TM Osborn, S Dib, MA Hayes, ...
Experimental Neurology 261, 217-229, 2014
132014
CRISPR/Cas9 genome editing throws descriptive 3‐D genome folding studies for a loop
JA Beagan, JE Phillips‐Cremins
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 8 (4), 286-299, 2016
42016
Stress-induced epigenetic regulation of transcription in neocortical excitatory neurons drives depression-like behavior
DY Kwon, P Hu, YT Zhao, JA Beagan, JH Nofziger, Y Cui, B Xu, ...
bioRxiv, 2020.07. 06.190280, 2020
22020
Elucidating the Regulatory Role of 3D Genome Folding During Neural Differentiation and Synaptic Activation
JA Beagan
University of Pennsylvania, 2020
2020
Rab1A and Rab3B gene therapy in the Q175 knock in model of Huntington's disease
GA Smith, EN Mangano, M Hayes, JR McLean, J Beagan, SC Izen, ...
NEUROREPORT 25 (3), 149-149, 2014
2014
Involvement of Rab Proteins in Corticostriatal Synaptic Function in the Q175 Knock in Model of Huntington's Disease
GA Smith, EN Mangano, M Hayes, J Beagan, T Brand, SC Izen, TB Brown, ...
CELL TRANSPLANTATION 22 (5), 916-917, 2013
2013
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Articles 1–20