| Compensatory mutations improve general permissiveness to antibiotic resistance plasmids W Loftie-Eaton, K Bashford, H Quinn, K Dong, J Millstein, S Hunter, ... Nature ecology & evolution 1 (9), 1354-1363, 2017 | 125 | 2017 |
| Evolutionary paths that expand plasmid host-range: implications for spread of antibiotic resistance W Loftie-Eaton, H Yano, S Burleigh, RS Simmons, JM Hughes, ... Molecular biology and evolution 33 (4), 885-897, 2016 | 104 | 2016 |
| The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards S Laurent, SP Pfeifer, ML Settles, SS Hunter, KM Hardwick, L Ormond, ... Molecular ecology 25 (1), 306-323, 2016 | 56 | 2016 |
| Retinoic acid signaling regulates differential expression of the tandemly-duplicated long wavelength-sensitive cone opsin genes in zebrafish DM Mitchell, CB Stevens, RA Frey, SS Hunter, R Ashino, S Kawamura, ... PLoS genetics 11 (8), e1005483, 2015 | 53 | 2015 |
| Retinal regeneration is facilitated by the presence of surviving neurons T Sherpa, T Lankford, TE McGinn, SS Hunter, RA Frey, C Sun, M Ryan, ... Developmental neurobiology 74 (9), 851-876, 2014 | 50 | 2014 |
| SeqyClean: a pipeline for high-throughput sequence data preprocessing IY Zhbannikov, SS Hunter, JA Foster, ML Settles Proceedings of the 8th ACM international conference on bioinformatics …, 2017 | 45 | 2017 |
| Comparative genome analysis of an avirulent and two virulent strains of avian Pasteurella multocida reveals candidate genes involved in fitness and pathogenicity TJ Johnson, JE Abrahante, SS Hunter, M Hauglund, FM Tatum, ... BMC microbiology 13 (1), 1-10, 2013 | 44 | 2013 |
| Assembly by Reduced Complexity (ARC): a hybrid approach for targeted assembly of homologous sequences SS Hunter, RT Lyon, BAJ Sarver, K Hardwick, LJ Forney, ML Settles Biorxiv, 014662, 2015 | 41 | 2015 |
| Regeneration associated transcriptional signature of retinal microglia and macrophages DM Mitchell, C Sun, SS Hunter, DD New, DL Stenkamp Scientific reports 9 (1), 1-17, 2019 | 39 | 2019 |
| Super deduper, fast PCR duplicate detection in fastq files KR Petersen, DA Streett, AT Gerritsen, SS Hunter, ML Settles Proceedings of the 6th ACM conference on bioinformatics, computational …, 2015 | 35 | 2015 |
| A Sex-Determining Gene (sdY) Assay Shows Discordance between Phenotypic and Genotypic Sex in Wild Populations of Chinook Salmon TD Cavileer, SS Hunter, J Olsen, J Wenburg, JJ Nagler Transactions of the American Fisheries Society 144 (2), 423-430, 2015 | 32 | 2015 |
| Identification of novel genes associated with molecular sex differentiation in the embryonic gonads of rainbow trout (Oncorhynchus mykiss) T Cavileer, S Hunter, T Okutsu, G Yoshizaki, JJ Nagler Sexual Development 3 (4), 214-224, 2009 | 28 | 2009 |
| Priority effects of wheat seed endophytes on a rhizosphere symbiosis ME Ridout, KL Schroeder, SS Hunter, J Styer, G Newcombe Symbiosis 78 (1), 19-31, 2019 | 22 | 2019 |
| Retinal proliferation response in the buphthalmic zebrafish, bugeye T Sherpa, SS Hunter, RA Frey, BD Robison, DL Stenkamp Experimental eye research 93 (4), 424-436, 2011 | 20 | 2011 |
| Silencing efficiency of dsRNA fragments targeting Fusarium graminearum TRI6 and patterns of small interfering RNA associated with reduced virulence and … T Baldwin, E Islamovic, K Klos, P Schwartz, J Gillespie, S Hunter, ... PloS one 13 (8), e0202798, 2018 | 18 | 2018 |
| Comparative Phylogenomic Assessment of Mitochondrial Introgression among Several Species of Chipmunks (Tamias) BAJ Sarver, JR Demboski, JM Good, N Forshee, SS Hunter, J Sullivan Genome Biology and Evolution 9 (1), 7-19, 2017 | 16 | 2017 |
| A rapid method for sequencing double-stranded RNAs purified from yeasts and the identification of a potent K1 killer toxin isolated from Saccharomyces cerevisiae AM Crabtree, EA Kizer, SS Hunter, JT Van Leuven, DD New, MW Fagnan, ... Viruses 11 (1), 70, 2019 | 15 | 2019 |
| The species-specific acquisition and diversification of a K1-like family of killer toxins in budding yeasts of the Saccharomycotina LR Fredericks, MD Lee, AM Crabtree, JM Boyer, EA Kizer, NT Taggart, ... PLoS genetics 17 (2), e1009341, 2021 | 13 | 2021 |
| Phase variation in Myxococcus xanthus yields cells specialized for iron sequestration K Dziewanowska, M Settles, S Hunter, I Linquist, F Schilkey, PL Hartzell PloS one 9 (4), e95189, 2014 | 13 | 2014 |
| SEQYCLEAN user manual IY Zhbannikov, SS Hunter, ML Settles New York, NY: Elsevier, 2013 | 13 | 2013 |
