|Compensatory mutations improve general permissiveness to antibiotic resistance plasmids|
W Loftie-Eaton, K Bashford, H Quinn, K Dong, J Millstein, S Hunter, ...
Nature ecology & evolution 1 (9), 1354-1363, 2017
|Evolutionary paths that expand plasmid host-range: implications for spread of antibiotic resistance|
W Loftie-Eaton, H Yano, S Burleigh, RS Simmons, JM Hughes, ...
Molecular biology and evolution 33 (4), 885-897, 2016
|The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards|
S Laurent, SP Pfeifer, ML Settles, SS Hunter, KM Hardwick, L Ormond, ...
Molecular ecology 25 (1), 306-323, 2016
|Retinoic acid signaling regulates differential expression of the tandemly-duplicated long wavelength-sensitive cone opsin genes in zebrafish|
DM Mitchell, CB Stevens, RA Frey, SS Hunter, R Ashino, S Kawamura, ...
PLoS genetics 11 (8), e1005483, 2015
|Retinal regeneration is facilitated by the presence of surviving neurons|
T Sherpa, T Lankford, TE McGinn, SS Hunter, RA Frey, C Sun, M Ryan, ...
Developmental neurobiology 74 (9), 851-876, 2014
|SeqyClean: a pipeline for high-throughput sequence data preprocessing|
IY Zhbannikov, SS Hunter, JA Foster, ML Settles
Proceedings of the 8th ACM international conference on bioinformatics …, 2017
|Comparative genome analysis of an avirulent and two virulent strains of avian Pasteurella multocida reveals candidate genes involved in fitness and pathogenicity|
TJ Johnson, JE Abrahante, SS Hunter, M Hauglund, FM Tatum, ...
BMC microbiology 13 (1), 1-10, 2013
|Assembly by Reduced Complexity (ARC): a hybrid approach for targeted assembly of homologous sequences|
SS Hunter, RT Lyon, BAJ Sarver, K Hardwick, LJ Forney, ML Settles
Biorxiv, 014662, 2015
|Regeneration associated transcriptional signature of retinal microglia and macrophages|
DM Mitchell, C Sun, SS Hunter, DD New, DL Stenkamp
Scientific reports 9 (1), 1-17, 2019
|Super deduper, fast PCR duplicate detection in fastq files|
KR Petersen, DA Streett, AT Gerritsen, SS Hunter, ML Settles
Proceedings of the 6th ACM conference on bioinformatics, computational …, 2015
|A Sex-Determining Gene (sdY) Assay Shows Discordance between Phenotypic and Genotypic Sex in Wild Populations of Chinook Salmon|
TD Cavileer, SS Hunter, J Olsen, J Wenburg, JJ Nagler
Transactions of the American Fisheries Society 144 (2), 423-430, 2015
|Identification of novel genes associated with molecular sex differentiation in the embryonic gonads of rainbow trout (Oncorhynchus mykiss)|
T Cavileer, S Hunter, T Okutsu, G Yoshizaki, JJ Nagler
Sexual Development 3 (4), 214-224, 2009
|Priority effects of wheat seed endophytes on a rhizosphere symbiosis|
ME Ridout, KL Schroeder, SS Hunter, J Styer, G Newcombe
Symbiosis 78 (1), 19-31, 2019
|Retinal proliferation response in the buphthalmic zebrafish, bugeye|
T Sherpa, SS Hunter, RA Frey, BD Robison, DL Stenkamp
Experimental eye research 93 (4), 424-436, 2011
|Silencing efficiency of dsRNA fragments targeting Fusarium graminearum TRI6 and patterns of small interfering RNA associated with reduced virulence and …|
T Baldwin, E Islamovic, K Klos, P Schwartz, J Gillespie, S Hunter, ...
PloS one 13 (8), e0202798, 2018
|Comparative Phylogenomic Assessment of Mitochondrial Introgression among Several Species of Chipmunks (Tamias)|
BAJ Sarver, JR Demboski, JM Good, N Forshee, SS Hunter, J Sullivan
Genome Biology and Evolution 9 (1), 7-19, 2017
|A rapid method for sequencing double-stranded RNAs purified from yeasts and the identification of a potent K1 killer toxin isolated from Saccharomyces cerevisiae|
AM Crabtree, EA Kizer, SS Hunter, JT Van Leuven, DD New, MW Fagnan, ...
Viruses 11 (1), 70, 2019
|The species-specific acquisition and diversification of a K1-like family of killer toxins in budding yeasts of the Saccharomycotina|
LR Fredericks, MD Lee, AM Crabtree, JM Boyer, EA Kizer, NT Taggart, ...
PLoS genetics 17 (2), e1009341, 2021
|Phase variation in Myxococcus xanthus yields cells specialized for iron sequestration|
K Dziewanowska, M Settles, S Hunter, I Linquist, F Schilkey, PL Hartzell
PloS one 9 (4), e95189, 2014
|SEQYCLEAN user manual|
IY Zhbannikov, SS Hunter, ML Settles
New York, NY: Elsevier, 2013