Thomas Hamelryck

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Remy LorisHoofddocent, VUBDirección de correo verificada de vub.be
Wouter BoomsmaAssociate Professor, Department of Computer Science, University of CopenhagenDirección de correo verificada de di.ku.dk
Jesper Ferkinghoff-BorgAssociate Professor, Research Director, Novo Nordisk A/SDirección de correo verificada de novonordisk.com
Kanti MardiaSENIOR RESARCH PROFESSOR ,UNIVERSITY OF LEEDS AND UNIVERSITY OF OXFORDDirección de correo verificada de leeds.ac.uk
Jes FrellsenAssociate Professor, Technical University of Denmark (DTU)Dirección de correo verificada de dtu.dk
Julie BouckaertUnite de Glycobiologie Structurale et FonctionelleDirección de correo verificada de univ-lille.fr
Iddo FriedbergAssociate Professor of Bioinformatics, Iowa State UniversityDirección de correo verificada de iastate.edu
Tiago AntaoUniversity of MontanaDirección de correo verificada de cam.ac.uk
Peter CockJames Hutton Institute (formerly known as the Scottish Crop Research Institute)Dirección de correo verificada de hutton.ac.uk
Christian AndreettaUniv. of Copenhagen, Denmark, and Uni Computing, Uni Research, NorwayDirección de correo verificada de uni.no
Simon OlssonAssistant Professor, Chalmers University of TechnologyDirección de correo verificada de chalmers.se
Anders KroghDepartment of Computer Science and Center for Health Data Science, University of CopenhagenDirección de correo verificada de di.ku.dk
Sandro BottaroHumanitas University & IRCCS Humanitas Research HospitalDirección de correo verificada de hunimed.eu
Tim HarderResearch Scientist at Philips ResearchDirección de correo verificada de philips.com
Kristoffer Enøe JohanssonDepartment of Pharmacy, University of CopenhagenDirección de correo verificada de sund.ku.dk
Charles C TaylorUniversity of LeedsDirección de correo verificada de maths.leeds.ac.uk
Kresten Lindorff-LarsenLinderstrøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenDirección de correo verificada de bio.ku.dk
Kasper StovgaardBioinformatics Centre, University of CopenhagenDirección de correo verificada de ihfood.dk
Lubomir D. AntonovPhD Fellow, University of CopenhagenDirección de correo verificada de binf.ku.dk
Jan H. JensenUniversity of CopenhagenDirección de correo verificada de chem.ku.dk

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Thomas Hamelryck

Dpt. of computer science / Dpt. of biology, University of Copenhagen

Dirección de correo verificada de binf.ku.dk - Página principal

Machine learning Bayesian statistics protein structure prediction probabilistic programming deep learning


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Biopython: freely available Python tools for computational molecular biology and bioinformatics PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ... Bioinformatics 25 (11), 1422-1423, 2009	3512	2009
Legume lectin structure R Loris, T Hamelryck, J Bouckaert, L Wyns Biochimica et biophysica acta (BBA)-Protein structure and molecular …, 1998	720	1998
PDB file parser and structure class implemented in Python T Hamelryck, B Manderick Bioinformatics 19 (17), 2308-2310, 2003	243	2003
A generative, probabilistic model of local protein structure W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ... Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008	180	2008
The crystallographic structure of phytohemagglutinin-L TW Hamelryck, MH Dao-Thi, F Poortmans, MJ Chrispeels, L Wyns, ... Journal of Biological Chemistry 271 (34), 20479-20485, 1996	162	1996
Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers fromDolichos biflorus TW Hamelryck, R Loris, J Bouckaert, MH Dao-Thi, G Strecker, A Imberty, ... Journal of molecular biology 286 (4), 1161-1177, 1999	155	1999
An amino acid has two sides: a new 2D measure provides a different view of solvent exposure T Hamelryck Proteins: Structure, Function, and Bioinformatics 59 (1), 38-48, 2005	154	2005
Sampling realistic protein conformations using local structural bias T Hamelryck, JT Kent, A Krogh PLoS Computational Biology 2 (9), e131, 2006	136	2006
A probabilistic model of RNA conformational space J Frellsen, I Moltke, M Thiim, KV Mardia, J Ferkinghoff-Borg, T Hamelryck PLoS computational biology 5 (6), e1000406, 2009	111	2009
Novel structures of plant lectins and their complexes with carbohydrates J Bouckaert, T Hamelryck, L Wyns, R Loris Current opinion in structural biology 9 (5), 572-577, 1999	107	1999
Potentials of mean force for protein structure prediction vindicated, formalized and generalized T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ... PloS one 5 (11), e13714, 2010	88	2010
NMR, molecular modeling, and crystallographic studies of lentil lectin-sucrose interaction F Casset, T Hamelryck, R Loris, JR Brisson, C Tellier, MH Dao-Thi, ... Journal of Biological Chemistry 270 (43), 25619-25628, 1995	75	1995
Beyond rotamers: a generative, probabilistic model of side chains in proteins T Harder, W Boomsma, M Paluszewski, J Frellsen, KE Johansson, ... BMC bioinformatics 11 (1), 1-13, 2010	71	2010
An evolutionary method for learning HMM structure: prediction of protein secondary structure KJ Won, T Hamelryck, A Prügel-Bennett, A Krogh BMC bioinformatics 8 (1), 1-13, 2007	66	2007
The crystal structures of Man (α1–3) Man (α1-O) Me and Man (α1–6) Man (α1-O) Me in complex with concanavalin A J Bouckaert, TW Hamelryck, L Wyns, R Loris Journal of Biological Chemistry 274 (41), 29188-29195, 1999	65	1999
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models K Stovgaard, C Andreetta, J Ferkinghoff-Borg, T Hamelryck BMC bioinformatics 11 (1), 1-14, 2010	59	2010
Inference of structure ensembles of flexible biomolecules from sparse, averaged data S Olsson, J Frellsen, W Boomsma, KV Mardia, T Hamelryck PloS one 8 (11), e79439, 2013	53	2013
The role of weak protein-protein interactions in multivalent lectin-carbohydrate binding: crystal structure of cross-linked FRIL TW Hamelryck, JG Moore, MJ Chrispeels, R Loris, L Wyns Journal of Molecular Biology 299 (4), 875-883, 2000	52	2000
Bayesian methods in structural bioinformatics T Hamelryck, K Mardia, J Ferkinghoff-Borg Springer, 2012	51	2012
Weak protein-protein interactions in lectins: the crystal structure of a vegetative lectin from the legume Dolichos biflorus L Buts, MH Dao-Thi, R Loris, L Wyns, M Etzler, T Hamelryck Journal of Molecular Biology 309 (1), 193-201, 2001	48	2001

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