Vangelis Simeonidis
Vangelis Simeonidis
Senior Project Manager, PATH
Verified email at path.org - Homepage
Title
Cited by
Cited by
Year
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
9722013
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ...
Nature biotechnology 26 (10), 1155-1160, 2008
6142008
Towards a genome-scale kinetic model of cellular metabolism
K Smallbone, E Simeonidis, N Swainston, P Mendes
BMC systems biology 4 (1), 1-9, 2010
1662010
Further developments towards a genome-scale metabolic model of yeast
PD Dobson, K Smallbone, D Jameson, E Simeonidis, K Lanthaler, P Pir, ...
BMC systems biology 4 (1), 1-7, 2010
1182010
Something from nothing− bridging the gap between constraint‐based and kinetic modelling
K Smallbone, E Simeonidis, DS Broomhead, DB Kell
The FEBS journal 274 (21), 5576-5585, 2007
1182007
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes
K Smallbone, HL Messiha, KM Carroll, CL Winder, N Malys, WB Dunn, ...
FEBS letters 587 (17), 2832-2841, 2013
1062013
Systems biology: the elements and principles of life
HV Westerhoff, C Winder, H Messiha, E Simeonidis, M Adamczyk, ...
FEBS letters 583 (24), 3882-3890, 2009
872009
Genome-scale modeling for metabolic engineering
E Simeonidis, ND Price
Journal of Industrial Microbiology and Biotechnology 42 (3), 327-338, 2015
842015
Flux balance analysis: a geometric perspective
K Smallbone, E Simeonidis
Journal of theoretical biology 258 (2), 311-315, 2009
812009
Robustness of the p53 network and biological hackers
L Dartnell, E Simeonidis, M Hubank, S Tsoka, IDL Bogle, ...
FEBS letters 579 (14), 3037-3042, 2005
542005
Macromolecular networks and intelligence in microorganisms
HV Westerhoff, AN Brooks, E Simeonidis, R García-Contreras, F He, ...
Frontiers in microbiology 5, 379, 2014
492014
Systematic integration of experimental data and models in systems biology
P Li, JO Dada, D Jameson, I Spasic, N Swainston, K Carroll, W Dunn, ...
BMC bioinformatics 11 (1), 1-11, 2010
432010
Capturing the essence of a metabolic network: a flux balance analysis approach
E Murabito, E Simeonidis, K Smallbone, J Swinton
Journal of theoretical biology 260 (3), 445-452, 2009
392009
Why does yeast ferment? A flux balance analysis study
E Simeonidis, E Murabito, K Smallbone, HV Westerhoff
Biochemical Society Transactions 38 (5), 1225-1229, 2010
332010
MINLP models for the synthesis of optimal peptide tags and downstream protein processing
E Simeonidis, JM Pinto, ME Lienqueo, S Tsoka, LG Papageorgiou
Biotechnology progress 21 (3), 875-884, 2005
312005
Mechanistic modeling of aberrant energy metabolism in human disease
V Sangar, JA Eddy, E Simeonidis, N Price
Frontiers in physiology 3, 404, 2012
252012
Analysis of metabolic networks using a pathway distance metric through linear programming
E Simeonidis, SCG Rison, JM Thornton, IDL Bogle, LG Papageorgiou
Metabolic engineering 5 (3), 211-219, 2003
252003
Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast
Z Wang, SA Danziger, BD Heavner, S Ma, JJ Smith, S Li, T Herricks, ...
PLoS computational biology 13 (5), e1005489, 2017
232017
MediaDB: a database of microbial growth conditions in defined media
MA Richards, V Cassen, BD Heavner, NE Ajami, A Herrmann, ...
PLoS One 9 (8), e103548, 2014
202014
KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways
I Spasić, E Simeonidis, HL Messiha, NW Paton, DB Kell
Bioinformatics 25 (11), 1404-1411, 2009
182009
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Articles 1–20