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Jia Wen
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Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1784, 2019
7592019
A deep auto-encoder model for gene expression prediction
R Xie, J Wen, A Quitadamo, J Cheng, X Shi
BMC genomics 18, 39-49, 2017
1252017
Cell-type-specific 3D epigenomes in the developing human cortex
Nature, 2020
1182020
Human-specific tandem repeat expansion and differential gene expression during primate evolution
A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ...
Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019
952019
Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia
M Halvorsen, R Huh, N Oskolkov, J Wen, S Netotea, P Giusti-Rodriguez, ...
Nature communications 11 (1), 1842, 2020
742020
Identification of domestication-related loci associated with flowering time and seed size in soybean with the RAD-seq genotyping method
YMZ Ling Zhou, Shi-Bo Wang,Jianbo Jian, Qing-Chun Geng, Jia Wen, Qijian Song ...
Scientific Report, 2015
742015
SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data
M Yu, A Abnousi, Y Zhang, G Li, L Lee, Z Chen, R Fang, TM Lagler, ...
Nature methods 18 (9), 1056-1059, 2021
482021
Leveraging base-pair mammalian constraint to understand genetic variation and human disease
PF Sullivan, JRS Meadows, S Gazal, BDN Phan, X Li, DP Genereux, ...
Science 380 (6643), eabn2937, 2023
392023
Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies
Q Sun, M Graff, B Rowland, J Wen, L Huang, TW Miller-Fleming, ...
Journal of human genetics 67 (2), 87-93, 2022
312022
Group spike-and-slab lasso generalized linear models for disease prediction and associated genes detection by incorporating pathway information
Z Tang, Y Shen, Y Li, X Zhang, J Wen, C Qian, W Zhuang, X Shi, N Yi
Bioinformatics 34 (6), 901-910, 2018
312018
A comprehensive comparison on cell-type composition inference for spatial transcriptomics data
J Chen, W Liu, T Luo, Z Yu, M Jiang, J Wen, GP Gupta, P Giusti, H Zhu, ...
Briefings in Bioinformatics 23 (4), bbac245, 2022
282022
Genetic dissection of heterosis using epistatic association mapping in a partial NCII mating design
YMZ Jia Wen, Xinwang Zhao, Guorong Wu, Dan Xiang, Qing Liu, Su-Hong Bu, Can ...
Scientific Reports, 2015
232015
Association of CNVs with methylation variation
X Shi, S Radhakrishnan, J Wen, JY Chen, J Chen, BA Lam, RE Mills, ...
NPJ genomic medicine 5 (1), 41, 2020
222020
Identification and validation of candidate genes associated with domesticated and improved traits in soybean
L Zhou, L Luo, JF Zuo, L Yang, L Zhang, X Guang, Y Niu, J Jian, QC Geng, ...
The plant genome 9 (2), plantgenome2015.09.0090, 2016
212016
Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nat Commun. 2019; 10 (1): 1784
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Epub 2019/04/18. https://doi. org/10.1038/s41467-018-08148-z PMID: 30992455, 0
19
From GWAS variant to function: A study of∼ 148,000 variants for blood cell traits
Q Sun, CA Crowley, L Huang, J Wen, J Chen, EL Bao, PL Auer, G Lettre, ...
Human Genetics and Genomics Advances 3 (1), 2022
182022
Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nat. Commun. 10, 1784
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
182019
Leveraging TOPMed imputation server and constructing a cohort-specific imputation reference panel to enhance genotype imputation among cystic fibrosis patients
Q Sun, W Liu, JD Rosen, L Huang, RG Pace, H Dang, PJ Gallins, EE Blue, ...
Human Genetics and Genomics Advances 3 (2), 2022
152022
Rare tandem repeat expansions associate with genes involved in synaptic and neuronal signaling functions in schizophrenia
J Wen, B Trost, W Engchuan, M Halvorsen, LM Pallotto, A Mitina, ...
Molecular Psychiatry 28 (1), 475-482, 2023
132023
Transcriptome-Wide association study of blood cell traits in African ancestry and Hispanic/Latino populations
J Wen, M Xie, B Rowland, JD Rosen, Q Sun, J Chen, AL Tapia, H Qian, ...
Genes 12 (7), 1049, 2021
132021
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