Sören Müller
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Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer
S Müller, S Raulefs, P Bruns, F Afonso-Grunz, A Plötner, R Thermann, ...
Molecular cancer 14 (1), 94, 2015
Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment
S Müller, G Kohanbash, SJ Liu, B Alvarado, D Carrera, A Bhaduri, ...
Genome biology 18 (1), 234, 2017
Principles of miRNA–mRNA interactions: beyond sequence complementarity
F Afonso-Grunz, S Müller
Cellular and Molecular Life Sciences 72 (16), 3127-3141, 2015
Massive analysis of cDNA Ends (MACE) and miRNA expression profiling identifies proatherogenic pathways in chronic kidney disease
AM Zawada, KS Rogacev, S Müller, B Rotter, P Winter, D Fliser, GH Heine
Epigenetics 9 (1), 161-172, 2014
omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data
S Müller, L Rycak, P Winter, G Kahl, I Koch, B Rotter
Bioinformatics 29 (20), 2651-2652, 2013
Single‐cell sequencing maps gene expression to mutational phylogenies in PDGF‐and EGF‐driven gliomas
S Müller, SJ Liu, E Di Lullo, M Malatesta, AA Pollen, TJ Nowakowski, ...
Molecular systems biology 12 (11), 889, 2016
APADB: a database for alternative polyadenylation and microRNA regulation events
S Müller, L Rycak, F Afonso-Grunz, P Winter, AM Zawada, E Damrath, ...
Database 2014, 2014
Genetic ablation of ataxin-2 increases several global translation factors in their transcript abundance but decreases translation rate
M Fittschen, I Lastres-Becker, MV Halbach, E Damrath, S Gispert, ...
Neurogenetics 16 (3), 181-192, 2015
Exploring the miRNA-mRNA regulatory network in clear cell renal cell carcinomas by next-generation sequencing expression profiles
S Müller, K Nowak
BioMed research international 2014, 2014
The phenotypes of proliferating glioblastoma cells reside on a single axis of variation
L Wang, H Babikir, S Müller, G Yagnik, K Shamardani, F Catalan, ...
Cancer discovery 9 (12), 1708-1719, 2019
Single-cell RNA sequencing reveals stromal evolution into LRRC15+ myofibroblasts as a determinant of patient response to cancer immunotherapy
CX Dominguez, S Müller, S Keerthivasan, H Koeppen, J Hung, S Gierke, ...
Cancer Discovery 10 (2), 232-253, 2020
Outer radial glia-like cancer stem cells contribute to heterogeneity of glioblastoma
A Bhaduri, E Di Lullo, D Jung, S Müller, EE Crouch, CS Espinosa, ...
Cell stem cell 26 (1), 48-63. e6, 2020
Identification of novel small ncRNAs in pollen of tomato
KL Bokszczanin, N Krezdorn, S Fragkostefanakis, S Müller, L Rycak, ...
BMC genomics 16 (1), 714, 2015
Transcriptomic analyses of adipocyte differentiation from human mesenchymal stromal‐cells (MSC)
A Casado‐Díaz, J Anter, S Müller, P Winter, JM Quesada‐Gómez, ...
Journal of cellular physiology 232 (4), 771-784, 2017
CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones
S Müller, A Cho, SJ Liu, DA Lim, A Diaz
Bioinformatics 34 (18), 3217, 2018
In silico analysis of regulatory networks underlines the role of miR-10b-5p and its target BDNF in huntington’s disease
S Müller
Translational neurodegeneration 3 (1), 17, 2014
DNA methylation profiling reveals differences in the 3 human monocyte subsets and identifies uremia to induce DNA methylation changes during differentiation
AM Zawada, JS Schneider, AI Michel, KS Rogacev, B Hummel, ...
Epigenetics 11 (4), 259-272, 2016
Single-Cell mRNA sequencing in cancer research: integrating the genomic fingerprint
S Müller, A Diaz
Frontiers in genetics 8, 73, 2017
Transcriptomic analyses of the anti-adipogenic effects of oleuropein in human mesenchymal stem cells
A Casado-Díaz, J Anter, S Müller, P Winter, JM Quesada-Gómez, ...
Food & function 8 (3), 1254-1270, 2017
Single-cell co-expression subnetwork analysis
TE Bartlett, S Müller, A Diaz
Scientific reports 7 (1), 1-11, 2017
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