| Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment S Müller*, G Kohanbash*, SJ Liu, B Alvarado, D Carrera, A Bhaduri, ... Genome Biology 18 (1), 1-14, 2017 | 538 | 2017 |
| Cross-tissue organization of the fibroblast lineage MB Buechler*, RN Pradhan*, AT Krishnamurty, C Cox, AK Calviello, ... Nature 593 (7860), 575-579, 2021 | 526 | 2021 |
| Single-cell RNA sequencing reveals stromal evolution into LRRC15+ myofibroblasts as a determinant of patient response to cancer immunotherapy CX Dominguez*, S Müller*, S Keerthivasan, H Koeppen, J Hung, S Gierke, ... Cancer Discovery 10 (2), 232-253, 2020 | 520 | 2020 |
| Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer S Müller, S Raulefs, P Bruns, F Afonso-Grunz, A Plötner, R Thermann, ... Molecular Cancer 14 (1), 1-18, 2015 | 280 | 2015 |
| Outer radial glia-like cancer stem cells contribute to heterogeneity of glioblastoma A Bhaduri*, E Di Lullo*, D Jung, S Müller, EE Crouch, CS Espinosa, ... Cell Stem Cell 26 (1), 48-63. e6, 2020 | 263 | 2020 |
| The phenotypes of proliferating glioblastoma cells reside on a single axis of variation L Wang*, H Babikir*, S Müller*, G Yagnik, K Shamardani, F Catalan, ... Cancer Discovery 9 (12), 1708-1719, 2019 | 245 | 2019 |
| Interpretation of T cell states from single-cell transcriptomics data using reference atlases M Andreatta, J Corria-Osorio, S Müller, R Cubas, G Coukos, SJ Carmona Nature communications 12 (1), 2965, 2021 | 242 | 2021 |
| Mesothelial cell-derived antigen-presenting cancer-associated fibroblasts induce expansion of regulatory T cells in pancreatic cancer H Huang, Z Wang, Y Zhang, RN Pradhan, D Ganguly, R Chandra, ... Cancer Cell 40 (6), 656-673. e7, 2022 | 202 | 2022 |
| Principles of miRNA–mRNA interactions: beyond sequence complementarity F Afonso-Grunz*, S Müller* Cellular and Molecular Life Sciences 72, 3127-3141, 2015 | 178 | 2015 |
| Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification AM Leader, JA Grout, BB Maier, BY Nabet, MD Park, A Tabachnikova, ... Cancer Cell 39 (12), 1594-1609. e12, 2021 | 175 | 2021 |
| The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments R Grieshaber-Bouyer, FA Radtke, P Cunin, G Stifano, A Levescot, ... Nature Communications 12 (1), 1-21, 2021 | 170 | 2021 |
| Intratumoral plasma cells predict outcomes to PD-L1 blockade in non-small cell lung cancer NS Patil*, BY Nabet*, S Müller, H Koeppen, W Zou, J Giltnane, ... Cancer Cell, 2022 | 169 | 2022 |
| Gut CD4+ T cell phenotypes are a continuum molded by microbes, not by TH archetypes E Kiner, E Willie, B Vijaykumar, K Chowdhary, H Schmutz, J Chandler, ... Nature Immunology 22 (2), 216-228, 2021 | 132 | 2021 |
| LRRC15+ myofibroblasts dictate the stromal setpoint to suppress tumour immunity AT Krishnamurty, JA Shyer, M Thai, V Gandham, MB Buechler, YA Yang, ... Nature 611 (7934), 148-154, 2022 | 115 | 2022 |
| Massive analysis of cDNA Ends (MACE) and miRNA expression profiling identifies proatherogenic pathways in chronic kidney disease AM Zawada, KS Rogacev, S Müller, B Rotter, P Winter, D Fliser, GH Heine Epigenetics 9 (1), 161-172, 2014 | 112 | 2014 |
| Single‐cell sequencing maps gene expression to mutational phylogenies in PDGF‐and EGF‐driven gliomas S Müller*, SJ Liu*, E Di Lullo, M Malatesta, AA Pollen, TJ Nowakowski, ... Molecular Systems Biology 12 (11), 889, 2016 | 106 | 2016 |
| APADB: a database for alternative polyadenylation and microRNA regulation events S Müller#, L Rycak, F Afonso-Grunz, P Winter, AM Zawada, E Damrath, ... Database 2014, bau076, 2014 | 104 | 2014 |
| CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones S Müller*, A Cho*, SJ Liu, DA Lim, A Diaz Bioinformatics 34 (18), 3217, 2018 | 94 | 2018 |
| Spatial positioning and matrix programs of cancer-associated fibroblasts promote T-cell exclusion in human lung tumors JA Grout, P Sirven, AM Leader, S Maskey, E Hector, I Puisieux, F Steffan, ... Cancer Discovery 12 (11), 2606-2625, 2022 | 88 | 2022 |
| Systemic vaccination induces CD8+ T cells and remodels the tumor microenvironment F Baharom, RA Ramirez-Valdez, A Khalilnezhad, S Khalilnezhad, ... Cell 185 (23), 4317-4332. e15, 2022 | 73 | 2022 |
